Client API

xcube_geodb.core.geodb.GeoDBClient

Bases: object

Constructing the geoDB client. Depending on the setup it will automatically setup credentials from environment variables. The user can also pass credentials into the constructor.

Parameters:
  • server_url (str, default: None ) –

    The URL of the PostGrest Rest API service

  • server_port (str, default: None ) –

    The port to the PostGrest Rest API service

  • dotenv_file (str, default: '.env' ) –

    Name of the dotenv file [.env] to set client IDs and secrets

  • client_secret (str, default: None ) –

    Client secret (overrides environment variables)

  • client_id (str, default: None ) –

    Client ID (overrides environment variables)

  • auth_mode (str, default: None ) –

    Authentication mode [silent]. Can be the oauth2 modes 'client-credentials', 'password',

  • auth_aud (str, default: None ) –

    Authentication audience

  • config_file (str, default: str(home()) + '/.geodb' ) –

    Filename that stores config info for the geodb client

Raises:
  • GeoDBError

    if the auth mode does not exist

  • NotImplementedError

    on auth mode interactive

Examples:

>>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
>>> geodb.whoami
my_user
Source code in xcube_geodb\core\geodb.py
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class GeoDBClient(object):
    """
    Constructing the geoDB client. Depending on the setup it will automatically setup credentials from
    environment variables. The user can also pass credentials into the constructor.

    Args:
        server_url (str): The URL of the PostGrest Rest API service
        server_port (str): The port to the PostGrest Rest API service
        dotenv_file (str): Name of the dotenv file [.env] to set client IDs and secrets
        client_secret (str): Client secret (overrides environment variables)
        client_id (str): Client ID (overrides environment variables)
        auth_mode (str): Authentication mode [silent]. Can be the oauth2 modes 'client-credentials', 'password',
        'interactive' and 'none' for no authentication
        auth_aud (str): Authentication audience
        config_file (str): Filename that stores config info for the geodb client

    Raises:
        GeoDBError: if the auth mode does not exist
        NotImplementedError: on auth mode interactive

    Examples:
        >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
        >>> geodb.whoami
        my_user
    """

    version = version

    def __init__(
        self,
        server_url: Optional[str] = None,
        server_port: Optional[int] = None,
        client_id: Optional[str] = None,
        client_secret: Optional[str] = None,
        username: Optional[str] = None,
        password: Optional[str] = None,
        access_token: Optional[str] = None,
        dotenv_file: str = ".env",
        auth_mode: str = None,
        auth_domain: str = None,
        auth_aud: Optional[str] = None,
        config_file: str = str(Path.home()) + "/.geodb",
        database: Optional[str] = None,
        access_token_uri: Optional[str] = None,
        gs_server_url: Optional[str] = None,
        gs_server_port: Optional[int] = None,
        raise_it: bool = True,
    ):

        self._use_auth_cache = True
        self._dotenv_file = dotenv_file
        self._database = None
        self._raise_it = raise_it
        # Access token is set here or on request

        # defaults
        self._server_url = GEODB_DEFAULTS["server_url"]
        self._server_port = GEODB_DEFAULTS["server_port"]
        self._gs_server_url = None
        self._gs_server_port = None
        self._auth_client_id = GEODB_DEFAULTS["auth_client_id"]
        self._auth_client_secret = GEODB_DEFAULTS["auth_client_secret"]
        self._auth_access_token = GEODB_DEFAULTS["auth_access_token"]
        self._auth_domain = GEODB_DEFAULTS["auth_domain"]
        self._auth_aud = GEODB_DEFAULTS["auth_aud"]
        self._auth_mode = GEODB_DEFAULTS["auth_mode"]
        self._auth_username = GEODB_DEFAULTS["auth_username"]
        self._auth_password = GEODB_DEFAULTS["auth_password"]
        self._auth_access_token_uri = GEODB_DEFAULTS["auth_access_token_uri"]
        # override defaults by .env
        self.refresh_config_from_env(dotenv_file=dotenv_file, use_dotenv=True)

        # override defaults and .env if given in constructor
        self._server_url = server_url or self._server_url
        self._gs_server_url = gs_server_url or self._gs_server_url
        self._gs_server_port = gs_server_port or self._gs_server_port
        self._server_port = server_port or self._server_port
        self._auth_client_id = client_id or self._auth_client_id
        self._auth_client_secret = client_secret or self._auth_client_secret
        self._auth_username = username or self._auth_username
        self._auth_password = password or self._auth_password
        self._auth_mode = auth_mode or self._auth_mode
        self._auth_aud = auth_aud or self._auth_aud
        self._auth_domain = auth_domain or self._auth_domain
        self._auth_access_token = access_token or self._auth_access_token
        self._auth_access_token_uri = access_token_uri or self._auth_access_token_uri

        self._database = database

        # Set geoserver hosts to geodb host if still unset
        self._gs_server_url = self._gs_server_url or self._server_url
        self._gs_server_port = self._gs_server_port or self._server_port

        self._capabilities = None

        self._whoami = None
        self._ipython_shell = None

        self._mandatory_properties = ["geometry", "id", "created_at", "modified_at"]

        self._config_file = config_file

        if self._auth_mode not in (
            "interactive",
            "password",
            "client-credentials",
            "openid",
            "none",
        ):
            raise GeoDBError(
                "auth_mode can only be 'interactive', 'password', "
                "'client-credentials', or 'openid'!"
            )

        if self._auth_mode == "interactive":
            raise NotImplementedError("The interactive mode has not been implemented.")
            # self._auth_login()

    def _set_from_env(self):
        """
        Load configurations from environment variables. Overrides defaults.

        """
        self._server_url = os.getenv("GEODB_API_SERVER_URL") or self._server_url
        self._server_port = os.getenv("GEODB_API_SERVER_PORT") or self._server_port
        self._gs_server_url = os.getenv("GEOSERVER_SERVER_URL") or self._gs_server_url
        self._gs_server_port = (
            os.getenv("GEOSERVER_SERVER_PORT") or self._gs_server_port
        )
        self._auth_client_id = os.getenv("GEODB_AUTH_CLIENT_ID") or self._auth_client_id
        self._auth_client_secret = (
            os.getenv("GEODB_AUTH_CLIENT_SECRET") or self._auth_client_secret
        )
        self._auth_access_token = (
            os.getenv("GEODB_AUTH_ACCESS_TOKEN") or self._auth_access_token
        )
        self._auth_domain = os.getenv("GEODB_AUTH_DOMAIN") or self._auth_domain
        self._auth_aud = os.getenv("GEODB_AUTH_AUD") or self._auth_aud
        self._auth_mode = os.getenv("GEODB_AUTH_MODE") or self._auth_mode
        self._auth_username = os.getenv("GEODB_AUTH_USERNAME") or self._auth_username
        self._auth_password = os.getenv("GEODB_AUTH_PASSWORD") or self._auth_password
        self._auth_access_token_uri = (
            os.getenv("GEODB_AUTH_ACCESS_TOKEN_URI") or self._auth_access_token_uri
        )
        self._database = os.getenv("GEODB_DATABASE") or self._database

    def get_collection_info(
        self, collection: str, database: Optional[str] = None
    ) -> Dict:
        """

        Args:
            collection (str): The name of the collection to inspect
            database (str): The database the collection resides in [current
            database]

        Returns:
            A dictionary with collection information

        Raises:
            GeoDBError: When the collection does not exist

        Examples:
            >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
            >>> geodb.get_collection_info('my_collection')
            {
                'required': ['id', 'geometry'],
                'properties': {
                'id': {
                    'format': 'integer', 'type': 'integer',
                    'description': 'Note:This is a Primary Key.'
                },
                'created_at': {'format': 'timestamp with time zone', 'type': 'string'},
                'modified_at': {'format': 'timestamp with time zone', 'type': 'string'},
                'geometry': {'format': 'public.geometry(Geometry,3794)', 'type': 'string'},
                'my_property1': {'format': 'double precision', 'type': 'number'},
                'my_property2': {'format': 'double precision', 'type': 'number'},
                'type': 'object'
            }
        """
        capabilities = self.capabilities
        database = database or self.database

        collection = database + "_" + collection

        if collection in capabilities["definitions"]:
            return capabilities["definitions"][collection]
        else:
            self._maybe_raise(GeoDBError(f"Table {collection} does not exist."))

    def get_collection_bbox(
        self,
        collection: str,
        database: Optional[str] = None,
        exact: Optional[bool] = False,
    ) -> Union[None, Sequence]:
        """
        Retrieves the bounding box for the collection, i.e. the union of all
        rows' geometries.

        Args:
            collection (str): The name of the collection to return the
             bounding box for.
            database (str): The database the collection resides in. Default:
             current database.
            exact (bool): If the exact bbox shall be computed. Warning: This
             may take much longer. Default: False.

        Returns:
            the bounding box given as tuple xmin, ymin, xmax, ymax or None if
            collection is empty

        Examples:
            >>> geodb = GeoDBClient(auth_mode='client-credentials', \
                                    client_id='***',
                                    client_secret='***')
            >>> geodb.get_collection_bbox('my_collection')
            (-5, 10, 5, 11)

        """
        try:
            from ast import literal_eval

            database = database or self.database
            dn = f"{database}_{collection}"

            if exact:
                r = self._post(
                    path="/rpc/geodb_get_collection_bbox", payload={"collection": dn}
                )
            else:
                r = self._post(
                    path="/rpc/geodb_estimate_collection_bbox",
                    payload={"collection": dn},
                )

            bbox = (
                r.text.replace("BOX", "")
                .replace(" ", ",")
                .replace("(", "")
                .replace(")", "")
                .replace('"', "")
            )
            if bbox == "null":
                return None
            bbox = literal_eval(bbox)
            return bbox[1], bbox[0], bbox[3], bbox[2]
        except GeoDBError as e:
            self._maybe_raise(e)

    def get_geometry_types(
        self, collection: str, aggregate: bool = True, database: Optional[str] = None
    ) -> List[str]:
        """
        Retrieves the geometry types of the given collection, either as an
        extensive list of the geometry types for each collection entry, or
        as aggregated list of the types that appear in the collection.

        Args:
            collection (str):  The collection to list geometry types for
            aggregate (bool):  If the result shall be an aggregated list, default is set to "True"
            database (str):    The database that contains the collection
        Returns:
            List[str]: A list of the geometry types, either for each
                       collection entry or aggregated.
        Raises:
            GeoDBError: If the database raises an error
        """

        try:
            database = database or self._database
            dn = f"{database}_{collection}"

            payload = {"collection": dn, "aggregate": "TRUE" if aggregate else "FALSE"}
            r = self._post(path="/rpc/geodb_geometry_types", payload=payload)
            types = r.json()[0]["types"]
            return [a["geometrytype"] for a in types]
        except GeoDBError as e:
            self._maybe_raise(e)

    def get_my_collections(self, database: Optional[str] = None) -> Sequence:
        """

        Args:
            database (str): The database to list collections from

        Returns:
            A Dataframe of collection names

        Examples:
            >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
            >>> geodb.get_my_collections()
                owner	                        database	                    collection
            0	geodb_9bfgsdfg-453f-445b-a459	geodb_9bfgsdfg-453f-445b-a459	land_use

        """

        try:
            database = database or self._database
            payload = {"database": database}
            r = self._post(path="/rpc/geodb_get_my_collections", payload=payload)
            js = r.json()[0]["src"]
            if js:
                return self._df_from_json(js)
            else:
                return DataFrame(columns=["collection"])
        except GeoDBError as e:
            self._maybe_raise(e)

    def _get_common_headers(self):
        if self._auth_mode == "none":
            return {
                "Prefer": "return=representation",
                "Content-type": "application/json",
            }
        else:
            return {
                "Prefer": "return=representation",
                "Content-type": "application/json",
                "Authorization": f"Bearer {self.auth_access_token}",
            }

    @property
    def raise_it(self) -> bool:
        """

        Returns:
            The current error message behaviour
        """
        return self._raise_it

    @raise_it.setter
    def raise_it(self, value: bool):
        self._raise_it = value

    @property
    def database(self) -> str:
        """

        Returns:
            The current database
        """
        return self._database or self.whoami

    @property
    def whoami(self) -> str:
        """

        Returns:
            The current database user
        """
        return self._whoami or self._get(path="/rpc/geodb_whoami").json()

    @property
    def capabilities(self) -> Dict:
        """

        Returns:
            A dictionary of the geoDB PostGrest REST API service's capabilities

        """
        return self._capabilities or self._get(path="/").json()

    def _refresh_capabilities(self):
        self._capabilities = None

    def get_geodb_sql_version(self) -> str:
        return self._get(path="/rpc/geodb_get_geodb_sql_version").text.replace('"', "")

    def refresh_config_from_env(
        self, dotenv_file: str = ".env", use_dotenv: bool = False
    ):
        """
        Refresh the configuration from environment variables. The variables can be preset by a dotenv file.
        Args:
            dotenv_file (str): A dotenv config file
            use_dotenv (bool): Whether to use GEODB_AUTH_CLIENT_ID a dotenv file.

        """
        if use_dotenv:
            self._dotenv_file = find_dotenv(filename=dotenv_file)
            if self._dotenv_file:
                load_dotenv(self._dotenv_file)
        self._set_from_env()

    def _post(
        self,
        path: str,
        payload: Union[Dict, Sequence],
        params: Optional[Dict] = None,
        headers: Optional[Dict] = None,
        raise_for_status: bool = True,
    ) -> requests.models.Response:
        """

        Args:
            headers [Optional[Dict]]: Request headers. Allows Overriding common header entries.
            path (str): API path
            payload (Union[Dict, Sequence]): Post body as Dict or Sequence. Will be dumped to JSON
            params Optional[Dict]: Request parameters
            raise_for_status (bool): raise or not if status is not 200-299 [True]
        Returns:
            requests.models.Response: A Request object

        Raises:
            GeoDBError: If the database raises an error
            HttpError: If the request fails
        """

        common_headers = self._get_common_headers()

        if headers is not None:
            common_headers.update(headers)

        r = None
        try:
            if common_headers["Content-type"] == "text/csv":
                r = requests.post(
                    self._get_full_url(path=path),
                    data=payload,
                    params=params,
                    headers=common_headers,
                )
            else:
                r = requests.post(
                    self._get_full_url(path=path),
                    json=payload,
                    params=params,
                    headers=common_headers,
                )
            if raise_for_status:
                r.raise_for_status()
        except requests.exceptions.HTTPError:
            raise GeoDBError(r.text)

        return r

    def _get(
        self, path: str, params: Optional[Dict] = None
    ) -> requests.models.Response:
        """

        Args:
            path (str): API path
            params (Optional[Dict]): Request parameters

        Returns:
            requests.models.Response: A Response object

        Raises:
            GeoDBError: If the database raises an error
            HttpError: If the request fails
        """

        r = None
        try:
            r = requests.get(
                self._get_full_url(path=path),
                params=params,
                headers=(self._get_common_headers()),
            )
            r.raise_for_status()
        except requests.exceptions.HTTPError:
            raise GeoDBError(r.content)

        return r

    def _delete(
        self, path: str, params: Optional[Dict] = None, headers: Optional[Dict] = None
    ) -> requests.models.Response:
        """

        Args:
            headers (Optional[Dict]): Request headers. Allows Overriding common header entries.
            path (str): API path
            params (Optional[Dict]): Request parameters

        Returns:
            requests.models.Response: A Request object

        Raises:
            GeoDBError: If the database raises an error
            HttpError: If the request fails
        """

        common_headers = self._get_common_headers()
        headers = (
            common_headers.update(headers) if headers else self._get_common_headers()
        )

        r = None
        try:
            r = requests.delete(
                self._get_full_url(path=path), params=params, headers=headers
            )
            r.raise_for_status()
        except requests.exceptions.HTTPError:
            raise GeoDBError(r.text)
        return r

    def _patch(
        self,
        path: str,
        payload: Union[Dict, Sequence],
        params: Optional[Dict] = None,
        headers: Optional[Dict] = None,
    ) -> requests.models.Response:
        """

        Args:
            headers (Optional[Dict]): Request headers. Allows Overriding common header entries.
            payload (Union[Dict, Sequence]): Post body as Dict. Will be dumped to JSON
            path (str): API path
            params (Optional[Dict]): Request parameters

        Returns:
            requests.models.Response: A Request object

        Raises:
            GeoDBError: If the database raises an error
            HttpError: If the request fails
        """

        common_headers = self._get_common_headers()
        headers = (
            common_headers.update(headers) if headers else self._get_common_headers()
        )

        r = None
        try:
            r = requests.patch(
                self._get_full_url(path=path),
                json=payload,
                params=params,
                headers=headers,
            )
            r.raise_for_status()
        except requests.HTTPError:
            raise GeoDBError(r.text)
        return r

    def _put(
        self,
        path: str,
        payload: Union[Dict, Sequence],
        params: Optional[Dict] = None,
        headers: Optional[Dict] = None,
    ) -> requests.models.Response:
        """

        Args:
            headers (Optional[Dict]): Request headers. Allows Overriding common header entries.
            payload (Union[Dict, Sequence]): Post body as Dict. Will be dumped to JSON
            path (str): API path
            params (Optional[Dict]): Request parameters

        Returns:
            requests.models.Response: A Request object

        Raises:
            GeoDBError: If the database raises an error
        """

        common_headers = self._get_common_headers()
        headers = (
            common_headers.update(headers) if headers else self._get_common_headers()
        )

        r = None
        try:
            r = requests.put(
                self._get_full_url(path=path),
                json=payload,
                params=params,
                headers=headers,
            )
            r.raise_for_status()
            return r
        except requests.HTTPError:
            raise GeoDBError(r.text)

    def _maybe_raise(self, e, return_df=False):
        if self._raise_it:
            raise e
        else:
            if return_df:
                try:
                    msg = json.loads(str(e))["message"]
                except:
                    msg = str(e)
                return DataFrame(
                    data={
                        "Error": [
                            msg,
                        ]
                    }
                )
            return Message(str(e))

    def get_my_usage(self, pretty=True) -> Union[Dict, Message]:
        """
        Get my geoDB data usage.

        Args:
            pretty (bool): Whether to return in human readable form or in bytes

        Returns:
            A dict containing the usage in bytes (int) or as a human readable string

        Example:
            >>> geodb = GeoDBClient()
            >>> geodb.get_my_usage(True)
            {'usage': '6432 kB'}
        """
        payload = {"pretty": pretty} if pretty else {}
        try:
            r = self._post(path="/rpc/geodb_get_my_usage", payload=payload)
            return r.json()[0]["src"][0]
        except GeoDBError as e:
            return self._maybe_raise(e)

    def create_collection_if_not_exists(
        self,
        collection: str,
        properties: Dict,
        crs: Union[int, str] = 4326,
        database: Optional[str] = None,
        **kwargs,
    ) -> Union[Dict, Message]:
        """
        Creates a collection only if the collection does not exist already.

        Args:
            collection (str): The name of the collection to be created
            properties (Dict): Properties to be added to the collection
            crs (int, str): projection
            database (str): The database the collection is to be created in [current database]
            kwargs: Placeholder for deprecated parameters

        Returns:
            Collection:  Collection info id operation succeeds
            None: If operation fails

        Examples:
            See create_collection for an example
        """
        exists = self.collection_exists(collection=collection, database=database)
        if not exists:
            try:
                return self.create_collection(
                    collection=collection,
                    properties=properties,
                    crs=crs,
                    database=database,
                    **kwargs,
                )
            except GeoDBError as e:
                return self._maybe_raise(e)

    def create_collections_if_not_exist(
        self, collections: Dict, database: Optional[str] = None, **kwargs
    ) -> Dict:
        """
        Creates collections only if collections do not exist already.

        Args:
            collections (Dict): The name of the collection to be created
            database (str): The database the collection is to be created in [current database]
            kwargs: Placeholder for deprecated parameters

        Returns:
            List of Collections: List of informations about created collections

        Examples:
            See create_collections for examples
        """
        res = dict()
        for collection in collections:
            exists = self.collection_exists(collection=collection, database=database)
            if exists is None:
                res[collection] = collections[collection]

        return self.create_collections(collections=res, database=database)

    def create_collections(
        self, collections: Dict, database: Optional[str] = None, clear: bool = False
    ) -> Union[Dict, Message]:
        """
        Create collections from a dictionary
        Args:
            clear (bool): Delete collections prioer to creation
            collections (Dict): A dictionalry of collections
            database (str): Database to use for creating the collection

        Returns:
            bool: Success

        Examples:
            >>> geodb = GeoDBClient()
            >>> collections = {'[MyCollection]': {'crs': 1234, 'properties': \
                    {'[MyProp1]': 'float', '[MyProp2]': 'date'}}}
            >>> geodb.create_collections(collections)
        """

        for collection in collections:
            if "crs" in collections[collection]:
                collections[collection]["crs"] = check_crs(
                    collections[collection]["crs"]
                )
            if clear:
                try:
                    self.drop_collection(collection=collection, database=database)
                except GeoDBError:
                    pass

        self._refresh_capabilities()

        database = database or self.database

        if not self.database_exists(database):
            return Message("Database does not exist.")

        buffer = {}
        for collection in collections:
            buffer[database + "_" + collection] = collections[collection]

        collections = {"collections": buffer}
        try:
            self._post(path="/rpc/geodb_create_collections", payload=collections)
            for collection in collections["collections"]:
                self._log_event(EventType.CREATED, f"collection {collection}")
            return Message(collections)
        except GeoDBError as e:
            return self._maybe_raise(e)

    def create_collection(
        self,
        collection: str,
        properties: Dict,
        crs: Union[int, str] = 4326,
        database: Optional[str] = None,
        clear: bool = False,
    ) -> Dict:
        """
        Create collections from a dictionary

        Args:
            collection (str): Name of the collection to be created
            clear (bool): Whether to delete existing collections
            properties (Dict): Property definitions for the collection
            database (str): Database to use for creating the collection
            crs: sfdv

        Returns:
            bool: Success

        Examples:
            >>> geodb = GeoDBClient()
            >>> properties = {'[MyProp1]': 'float', '[MyProp2]': 'date'}
            >>> geodb.create_collection(collection='[MyCollection]', crs=3794, properties=properties)
        """
        crs = check_crs(crs)
        collections = {collection: {"properties": properties, "crs": str(crs)}}

        self._refresh_capabilities()

        return self.create_collections(
            collections=collections, database=database, clear=clear
        )

    def drop_collection(
        self, collection: str, database: Optional[str] = None
    ) -> Message:
        """

        Args:
            collection (str): Name of the collection to be dropped
            database (str): The database the colections resides in [current database]

        Returns:
            bool: Success

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.drop_collection(collection='[MyCollection]')
        """

        database = database or self.database
        return self.drop_collections(
            collections=[collection], database=database, cascade=True
        )

    def drop_collections(
        self,
        collections: Sequence[str],
        cascade: bool = False,
        database: Optional[str] = None,
    ) -> Message:
        """

        Args:
            database (str): The database the colections resides in [current database]
            collections (Sequence[str]): Collections to be dropped
            cascade (bool): Drop in cascade mode. This can be necessary if e.g. sequences have not been
                            deleted properly

        Returns:
            Message

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.drop_collections(collections=['[MyCollection1]', '[MyCollection2]'])
        """

        self._refresh_capabilities()

        database = database or self.database
        collections = [database + "_" + collection for collection in collections]
        payload = {
            "collections": collections,
            "cascade": "TRUE" if cascade else "FALSE",
        }

        try:
            self._post(path="/rpc/geodb_drop_collections", payload=payload)
            for collection in collections:
                self._log_event(EventType.DROPPED, f"collection {collection}")
            return Message(f"Collection {str(collections)} deleted")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def grant_access_to_collection(
        self, collection: str, usr: str, database: Optional[str] = None
    ) -> Message:
        """

        Args:
            collection (str): Collection name to grant access to
            usr (str): Username to grant access to
            database (str): The database the collection resides in

        Returns:
            bool: Success

        Raises:
            HttpError: when http request fails

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.grant_access_to_collection('[Collection]', '[User who gets access]')
            Access granted on Collection to User who gets access}
        """
        database = database or self.database
        dn = f"{database}_{collection}"

        try:
            self._post(
                path="/rpc/geodb_grant_access_to_collection",
                payload={"collection": dn, "usr": usr},
            )

            return Message(f"Access granted on {collection} to {usr}")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def rename_collection(
        self, collection: str, new_name: str, database: Optional[str] = None
    ):
        """

        Args:
            collection (str): The name of the collection to be renamed
            new_name (str):The new name of the collection
            database (str): The database the collection resides in

        Raises:
            HttpError: When request fails
        """

        database = database or self._database

        old_dn = f"{database}_{collection}"
        new_dn = f"{database}_{new_name}"

        try:
            self._post(
                path="/rpc/geodb_rename_collection",
                payload={"collection": old_dn, "new_name": new_dn},
            )
            self._log_event(EventType.RENAMED, f"collection {old_dn} to {new_dn}")
            return Message(f"Collection renamed from {collection} to {new_name}")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def move_collection(
        self, collection: str, new_database: str, database: Optional[str] = None
    ):
        """
        Move a collection from one database to another.

        Args:
            collection (str): The name of the collection to be moved
            new_database (str): The database the collection will be moved to
            database (str): The database the collection resides in

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.move_collection('collection', 'new_database')
        """

        database = database or self._database
        old_dn = f"{database}_{collection}"
        new_dn = f"{new_database}_{collection}"

        try:
            self._post(
                path="/rpc/geodb_rename_collection",
                payload={"collection": old_dn, "new_name": new_dn},
            )

            self._log_event(EventType.MOVED, f"collection {old_dn} to {new_dn}")
            return Message(f"Collection moved from {database} to " f"{new_database}")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def copy_collection(
        self,
        collection: str,
        new_collection: str,
        new_database: str,
        database: Optional[str] = None,
    ):
        """

        Args:
            collection (str): The name of the collection to be copied
            new_collection (str): The new name of the collection
            database (str): The database the collection resides in
                            [current database]
            new_database (str): The database the collection will be copied to

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.copy_collection('col', 'col_new', 'target_db',
                                      'source_db')
        """

        database = database or self._database
        from_dn = f"{database}_{collection}"
        to_dn = f"{new_database}_{new_collection}"

        try:
            self._post(
                path="/rpc/geodb_copy_collection",
                payload={"old_collection": from_dn, "new_collection": to_dn},
            )

            self._log_event(EventType.COPIED, f"collection {from_dn} to {to_dn}")
            return Message(f"Collection copied from {from_dn} to {to_dn}")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def publish_collection(
        self, collection: str, database: Optional[str] = None
    ) -> Message:
        """
        Publish a collection. The collection will be accessible by all users
        in the geoDB.

        Args:
            database (str): The database the collection resides in
                            [current database]
            collection (str): The name of the collection that will be made
                              public

        Returns:
            Message: Message whether operation succeeded

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.publish_collection('[Collection]')
        """
        try:
            database = database or self.database

            self.grant_access_to_collection(
                collection=collection, usr="public", database=database
            )
            self._log_event(
                EventType.PUBLISHED, f"collection " f"{database}_{collection}"
            )
            return Message(f"Access granted on {database}_{collection} to " f"public.")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def unpublish_collection(
        self, collection: str, database: Optional[str] = None
    ) -> Message:
        """
        Revoke public access to a collection. The collection will not be
        accessible by all users in the geoDB.

        Args:
            database (str): The database the collection resides in
            [current database]
            collection (str): The name of the collection that will be removed
            from public access

        Returns:
            Message: Message whether operation succeeded

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.unpublish_collection('[Collection]')
        """
        database = database or self.database

        try:
            return self.revoke_access_from_collection(
                collection=collection, usr="public", database=database
            )
        except GeoDBError as e:
            return self._maybe_raise(e)

    def revoke_access_from_collection(
        self, collection: str, usr: str, database: Optional[str] = None
    ) -> Message:
        """
        Revoke access from a collection.

        Args:
            collection (str): Name of the collection
            usr (str): User to revoke access from
            database (str): The database the collection resides in
                            [current database]

        Returns:
            Message: Whether operation has succeeded
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        try:
            self._post(
                path="/rpc/geodb_revoke_access_from_collection",
                payload={"collection": dn, "usr": usr},
            )
            self._log_event(EventType.UNPUBLISHED, f"collection {dn}")
            return Message(f"Access revoked from public on {dn}")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def list_my_grants(self) -> Union[DataFrame, Message]:
        """
        List the access grants the current user has granted.

        Returns:
            DataFrame: A list of the current user's access grants

        Raises:
            GeoDBError: If access to geoDB fails
        """
        r = self._post(path="/rpc/geodb_list_grants", payload={})
        try:
            js = r.json()
        except JSONDecodeError as e:
            raise GeoDBError("Body not in valid JSON format: " + str(e))
        try:
            if isinstance(js, list) and len(js) > 0 and "src" in js[0] and js[0]["src"]:
                return self._df_from_json(js[0]["src"])
            else:
                return DataFrame(data={"Grants": ["No Grants"]})
        except Exception as e:
            return self._maybe_raise(GeoDBError(str(e)))

    def add_property(
        self, collection: str, prop: str, typ: str, database: Optional[str] = None
    ) -> Message:
        """
        Add a property to an existing collection.

        Args:
            collection (str): The name of the collection to add a property to
            prop (str): Property name
            typ (str): The data type of the property (Postgres type)
            database (str): The database the collection resides in [current
                            database]

        Returns:
            Message: Success message

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.add_property(collection='[MyCollection]', \
                name='[MyProperty]', type='[PostgresType]')
        """
        prop = {prop: typ}

        return self.add_properties(
            collection=collection, properties=prop, database=database
        )

    def add_properties(
        self, collection: str, properties: Dict, database: Optional[str] = None
    ) -> Message:
        """
        Add properties to a collection.

        Args:
            collection (str): The name of the collection to add properties to
            properties (Dict): Property definitions as dictionary
            database (str): The database the collection resides in [current
                            database]
        Returns:
            Message: Whether the operation succeeded

        Examples:
            >>> properties = {'[MyName1]': '[PostgresType1]', \
                              '[MyName2]': '[PostgresType2]'}
            >>> geodb = GeoDBClient()
            >>> geodb.add_property(collection='[MyCollection]', \
                                   properties=properties)
        """

        self._refresh_capabilities()

        database = database or self.database
        dn = database + "_" + collection

        try:
            self._post(
                path="/rpc/geodb_add_properties",
                payload={"collection": dn, "properties": properties},
            )
            for prop_name in properties:
                prop_type = properties[prop_name]
                self._log_event(
                    EventType.PROPERTY_ADDED,
                    f"{{name: {prop_name}, " f"type: {prop_type}}} to collection {dn}",
                )
            return Message(f"Properties added")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def drop_property(
        self, collection: str, prop: str, database: Optional[str] = None, **kwargs
    ) -> Message:
        """
        Drop a property from a collection.

        Args:
            collection (str): The name of the collection to drop the property from
            prop (str): The property to delete
            database (str): The database the collection resides in [current database]

        Returns:
            Message: Whether the operation succeeded

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.drop_property(collection='[MyCollection]', \
                                    prop='[MyProperty]')
        """

        return self.drop_properties(
            collection=collection, properties=[prop], database=database
        )

    def drop_properties(
        self, collection: str, properties: Sequence[str], database: Optional[str] = None
    ) -> Message:
        """
        Drop properties from a collection.

        Args:
            collection (str):  The name of the collection to delete properties
                               from
            properties (List): A list containing the property names
            database (str):    The database the collection resides in [current
                               database]
        Returns:
            Message: Whether the operation succeeded

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.drop_properties(collection='MyCollection', \
                                      properties=['MyProperty1', \
                                                  'MyProperty2'])
        """

        self._refresh_capabilities()
        database = database or self.database
        collection = database + "_" + collection

        self._raise_for_mandatory_columns(properties)

        self._raise_for_stored_procedure_exists("geodb_drop_properties")

        try:
            self._post(
                path="/rpc/geodb_drop_properties",
                payload={"collection": collection, "properties": properties},
            )
            for prop in properties:
                self._log_event(
                    EventType.PROPERTY_DROPPED, f"{prop} from collection {collection}"
                )

            return Message(
                f"Properties {str(properties)} dropped from " f"{collection}"
            )
        except GeoDBError as e:
            return self._maybe_raise(e)

    def _raise_for_mandatory_columns(self, properties: Sequence[str]):
        common_props = list(set(properties) & set(self._mandatory_properties))
        if len(common_props) > 0:
            raise GeoDBError("Don't delete the following columns: " + str(common_props))

    @deprecated_kwarg("namespace", "database")
    def get_properties(
        self, collection: str, database: Optional[str] = None, **kwargs
    ) -> DataFrame:
        """
        Get a list of properties of a collection.

        Args:
            collection (str): The name of the collection to retrieve a list of properties from
            database (str): The database the collection resides in [current database]

        Returns:
            DataFrame: A list of properties

        """
        database = database or self.database
        collection = database + "_" + collection

        try:
            r = self._post(
                path="/rpc/geodb_get_properties", payload={"collection": collection}
            )

            js = r.json()[0]["src"]

            if js:
                return self._df_from_json(js)
            else:
                return DataFrame(columns=["collection", "column_name", "data_type"])
        except GeoDBError as e:
            self._maybe_raise(e, return_df=True)

    def create_database(self, database: str) -> Message:
        """
        Create a database.

        Args:
            database (str): The name of the database to be created

        Returns:
            Message: A message about the success or failure of the operation

        """

        try:
            self._post(
                path="/rpc/geodb_create_database", payload={"database": database}
            )
            return Message(f"Database {database} created")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def truncate_database(self, database: str) -> Message:
        """
        Delete all tables in the given database.

        Args:
            database (str): The name of the database to be created

        Returns:
            Message: A message about the success or failure of the operation

        """

        try:
            self._post(
                path="/rpc/geodb_truncate_database", payload={"database": database}
            )
            return Message(f"Database {database} truncated")
        except GeoDBError as e:
            return self._maybe_raise(e)

    def get_my_databases(self) -> DataFrame:
        """
        Get a list of databases the current user owns.

        Returns:
            DataFrame: A list of databases the user owns

        """

        try:
            return self.get_collection(
                collection="user_databases",
                database="geodb",
                query=f"owner=eq.{self.whoami}",
            )
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=True)

    def database_exists(self, database: str) -> bool:
        """
        Checks whether a database exists.

        Args:
            database (str): The name of the database to be checked

        Returns:
            bool: database exists

        Raises:
            HttpError: If request fails

        """

        try:
            res = self.get_collection(
                collection="user_databases",
                database="geodb",
                query=f"name=eq.{database}",
            )
            return len(res) > 0
        except GeoDBError as e:
            self._maybe_raise(e)

    def delete_from_collection(
        self, collection: str, query: str, database: Optional[str] = None
    ) -> Message:
        """
        Delete rows from collection.

        Args:
            collection (str): The name of the collection to delete rows from
            database (str): The name of the database to be checked
            query (str): Filter which records to delete. Follow the
                         https://postgrest.org/en/v6.0/api.html query convention.
        Returns:
            Message: Whether the operation has succeeded

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.delete_from_collection('[MyCollection]', 'id=eq.1')
        """

        database = database or self.database
        dn = database + "_" + collection

        try:
            self._delete(f"/{dn}?{query}")
            self._log_event(
                EventType.ROWS_DROPPED, f"from collection {dn} where {query}"
            )
            return Message(f"Data from {collection} deleted")
        except GeoDBError as e:
            return self._maybe_raise(e)

    @deprecated_kwarg("namespace", "database")
    def update_collection(
        self,
        collection: str,
        values: Dict,
        query: str,
        database: Optional[str] = None,
        **kwargs,
    ) -> Message:
        """
        Update data in a collection by a query.

        Args:
            collection (str): The name of the collection to be updated
            database (str): The name of the database to be checked
            values (Dict): Values to update
            query (str): Filter which values to be updated. Follow the http://postgrest.org/en/v6.0/api.html query
            convention.
        Returns:
            Message: Success

        Raises:
            GeoDBError: if the values is not a Dict or request fails
        Example:

        """

        database = database or self.database
        dn = database + "_" + collection

        self._raise_for_collection_exists(collection=collection, database=database)

        if isinstance(values, Dict):
            if "id" in values.keys():
                del values["id"]
        else:
            raise GeoDBError(f"Format {type(values)} not supported.")

        try:
            self._patch(f"/{dn}?{query}", payload=values)
            return Message(f"{collection} updated")
        except GeoDBError as e:
            return self._maybe_raise(e)

    # noinspection PyMethodMayBeStatic
    def _gdf_prepare_geom(self, gpdf: GeoDataFrame, crs: int = None) -> DataFrame:
        if crs is None:
            crs = gpdf.crs.to_epsg()

            if crs is None:
                raise GeoDBError(
                    "Invalid crs in geopandas data frame. You can pass the crs as parameter "
                    "(crs=[your crs])"
                )

        def add_srid(point):
            point_str = str(point)
            if "SRID" not in point_str:
                return f"SRID={str(crs)};" + str(point)
            else:
                return str(point)

        gpdf2 = DataFrame(gpdf.copy())
        gpdf2["geometry"] = gpdf2["geometry"].apply(add_srid)
        return gpdf2

    def _gdf_to_json(self, gpdf: GeoDataFrame, crs: int = None) -> Dict:
        gpdf = self._gdf_prepare_geom(gpdf, crs)
        res = gpdf.to_dict("records")
        return res

    def insert_into_collection(
        self,
        collection: str,
        values: GeoDataFrame,
        upsert: bool = False,
        crs: Optional[Union[int, str]] = None,
        database: Optional[str] = None,
        max_transfer_chunk_size: int = 1000,
    ) -> Message:
        """
        Insert data into a collection.

        Args:
            collection (str): Collection to be inserted to
            database (str): The name of the database the collection resides in
                            [current database]
            values (GeoDataFrame): Values to be inserted
            upsert (bool): Whether the insert shall replace existing rows
                           (by PK)
            crs (int, str): crs (in the form of an SRID) of the geometries. If
                            not present, the method will attempt guessing it
                            from the GeoDataFrame input. Must be in sync with
                            the target collection in the GeoDatabase
            max_transfer_chunk_size (int): Maximum number of rows per chunk to
                                           be sent to the geodb.

        Raises:
            ValueError: When crs is not given and cannot be guessed from the
                        GeoDataFrame
            GeoDBError: If the values are not in format Dict

        Returns:
            bool: Success

        Example:

        """
        srid = self.get_collection_srid(collection, database)
        crs = check_crs(crs)
        if crs and srid and srid != crs:
            raise GeoDBError(
                f"crs {crs} is not compatible with collection's " f"crs {srid}"
            )

        crs = crs or srid
        total_rows = 0

        database = database or self.database
        dn = database + "_" + collection

        if isinstance(values, GeoDataFrame):
            # headers = {'Content-type': 'text/csv'}
            # values = self._gdf_prepare_geom(values, crs)
            ct = 0
            cont = True
            total_rows = values.shape[0]

            while cont:
                frm = ct
                to = ct + max_transfer_chunk_size - 1
                ngdf = values.loc[frm:to]
                ct += max_transfer_chunk_size

                nct = ngdf.shape[0]
                cont = nct > 0
                if not cont:
                    break

                if nct < max_transfer_chunk_size:
                    to = frm + nct

                print(f"Processing rows from {frm} to {to}")
                if "id" in ngdf.columns and not upsert:
                    ngdf.drop(columns=["id"])

                ngdf.columns = map(str.lower, ngdf.columns)
                js = self._gdf_to_json(ngdf, crs)

                if upsert:
                    headers = {"Prefer": "resolution=merge-duplicates"}
                else:
                    headers = None

                try:
                    self._post(f"/{dn}", payload=js, headers=headers)
                except GeoDBError as e:
                    return self._maybe_raise(e)
                except requests.exceptions.ConnectionError as e:
                    if "Connection aborted" in str(
                        e
                    ) and "LineTooLong('got more than 65536 bytes " "when reading header line')" in str(
                        e
                    ):
                        # ignore this error - the ingestion has worked.
                        # see https://github.com/dcs4cop/xcube-geodb/issues/60
                        pass
                    else:
                        raise e
        else:
            self._maybe_raise(
                GeoDBError(f"Error: Format {type(values)} not " f"supported.")
            )

        msg = f"{total_rows} rows inserted into "
        self._log_event(EventType.ROWS_ADDED, f"{msg}{dn}")
        return Message(f"{msg}{collection}")

    @staticmethod
    def transform_bbox_crs(
        bbox: Tuple[float, float, float, float],
        from_crs: Union[int, str],
        to_crs: Union[int, str],
        wsg84_order: str = "lat_lon",
    ):
        """
        This function can be used to reproject bboxes particularly with the use of GeoDBClient.get_collection_by_bbox.

        Args:
            bbox: Tuple[float, float, float, float]: bbox to be reprojected, given as MINX, MINY, MAXX, MAXY
            from_crs: Source crs e.g. 3974
            to_crs: Target crs e.g. 4326
            wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
                               Lon Lat is used.
        Returns:
            Tuple[float, float, float, float]: The reprojected bounding box

        Examples:
             >>> bbox = GeoDBClient.transform_bbox_crs(bbox=(450000, 100000, 470000, 110000), from_crs=3794, to_crs=4326)
             >>> bbox
             (49.36588643725233, 46.012889756941775, 14.311548793848758, 9.834303086688251)

        """
        from pyproj import Transformer

        from_crs = check_crs(from_crs)
        to_crs = check_crs(to_crs)

        if wsg84_order == "lat_lon" and from_crs == 4326:
            bbox = (bbox[1], bbox[0], bbox[3], bbox[2])

        transformer = Transformer.from_crs(f"EPSG:{from_crs}", f"EPSG:{to_crs}")
        p1 = transformer.transform(bbox[MINX], bbox[MINY])
        p2 = transformer.transform(bbox[MAXX], bbox[MAXY])

        if wsg84_order == "lat_lon" and to_crs == 4326:
            return p1[1], p1[0], p2[1], p2[0]

        return p1[0], p1[1], p2[0], p2[1]

    @deprecated_kwarg("namespace", "database")
    def get_collection_by_bbox(
        self,
        collection: str,
        bbox: Tuple[float, float, float, float],
        comparison_mode: str = "contains",
        bbox_crs: Union[int, str] = 4326,
        limit: int = 0,
        offset: int = 0,
        where: Optional[str] = "id>-1",
        op: str = "AND",
        database: Optional[str] = None,
        wsg84_order="lat_lon",
        **kwargs,
    ) -> Union[GeoDataFrame, DataFrame]:
        """
        Query the database by a bounding box. Please be careful with the bbox crs. The easiest is
        using the same crs as the collection. However, if the bbox crs differs from the collection,
        the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs.
        You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into
        this method.

        Args:
            collection (str): The name of the collection to be quried
            bbox (Tuple[float, float, float, float]): minx, miny, maxx, maxy
            comparison_mode (str): Filter mode. Can be 'contains' or 'within' ['contains']
            bbox_crs (int, str): Projection code. [4326]
            op (str): Operator for where (AND, OR) ['AND']
            where (str): Additional SQL where statement to further filter the collection
            limit (int): The maximum number of rows to be returned
            offset (int): Offset (start) of rows to return. Used in combination with limit.
            database (str): The name of the database the collection resides in [current database]
            wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
            Lon Lat is used.

        Returns:
            A GeoPandas Dataframe

        Raises:
            HttpError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.get_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0, \
                102486.299), comparison_mode="contains", bbox_crs=3794, limit=10, offset=10)
        """
        bbox_crs = check_crs(bbox_crs)
        database = database or self.database
        dn = database + "_" + collection

        self._raise_for_collection_exists(collection=collection, database=database)
        self._raise_for_stored_procedure_exists("geodb_get_by_bbox")

        coll_crs = self.get_collection_srid(collection=collection, database=database)

        try:
            if coll_crs is not None and coll_crs != bbox_crs:
                bbox = self.transform_bbox_crs(
                    bbox, bbox_crs, int(coll_crs), wsg84_order=wsg84_order
                )
                bbox_crs = coll_crs

            headers = {"Accept": "application/vnd.pgrst.object+json"}

            r = self._post(
                "/rpc/geodb_get_by_bbox",
                headers=headers,
                payload={
                    "collection": dn,
                    "minx": bbox[0],
                    "miny": bbox[1],
                    "maxx": bbox[2],
                    "maxy": bbox[3],
                    "comparison_mode": comparison_mode,
                    "bbox_crs": bbox_crs,
                    "limit": limit,
                    "where": where,
                    "op": op,
                    "offset": offset,
                },
            )

            js = r.json()["src"]
            if js:
                srid = self.get_collection_srid(collection, database)
                return self._df_from_json(js, srid)
            else:
                return GeoDataFrame(columns=["Empty Result"])
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=True)

    def count_collection_rows(
        self,
        collection: str,
        database: Optional[str] = None,
        exact_count: Optional[bool] = False,
    ) -> Union[int, Message]:
        """
        Return the number of rows in the given collection. By default, this
        function returns a rough estimate within the order of magnitude of the
        actual number; the exact count can also be retrieved, but this may take
        much longer.
        Note: in some cases, no estimate can be provided. In such cases,
        -1 is returned if exact_count == False.

        Args:
            collection (str):   The name of the collection
            database (str):     The name of the database the collection resides
                                in [current database]
            exact_count (bool): If True, the actual number of rows will be
                                counted. Default value: false.

        Returns:
            the number of rows in the given collection, or -1 if exact_count
            is False and no estimate could be provided.

        Raises:
            GeoDBError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.count_collection_rows('my_collection'], exact_count=True)
        """

        database = database or self.database
        dn = database + "_" + collection

        try:
            if exact_count:
                r = self._post(
                    "/rpc/geodb_count_collection", payload={"collection": dn}
                )
            else:
                r = self._post(
                    "/rpc/geodb_estimate_collection_count", payload={"collection": dn}
                )
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=False)

        return int(r.text)

    def count_collection_by_bbox(
        self,
        collection: str,
        bbox: Tuple[float, float, float, float],
        comparison_mode: str = "contains",
        bbox_crs: Union[int, str] = 4326,
        where: Optional[str] = "id>-1",
        op: str = "AND",
        database: Optional[str] = None,
        wsg84_order="lat_lon",
    ) -> Union[GeoDataFrame, DataFrame]:
        """
        Query the database by a bounding box and return the count. Please be careful with the bbox crs. The easiest is
        using the same crs as the collection. However, if the bbox crs differs from the collection,
        the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs.
        You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into
        this method.

        Args:
            collection (str): The name of the collection to be quried
            bbox (Tuple[float, float, float, float]): minx, miny, maxx, maxy
            comparison_mode (str): Filter mode. Can be 'contains' or 'within' ['contains']
            bbox_crs (int, str): Projection code. [4326]
            op (str): Operator for where (AND, OR) ['AND']
            where (str): Additional SQL where statement to further filter the collection
            database (str): The name of the database the collection resides in [current database]
            wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
            Lon Lat is used.

        Returns:
            A GeoPandas Dataframe

        Raises:
            HttpError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.count_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0, \
                102486.299), comparison_mode="contains", bbox_crs=3794)
        """
        bbox_crs = check_crs(bbox_crs)
        database = database or self.database
        dn = database + "_" + collection

        self._raise_for_collection_exists(collection=collection, database=database)
        self._raise_for_stored_procedure_exists("geodb_get_by_bbox")

        coll_crs = self.get_collection_srid(collection=collection, database=database)

        try:
            if coll_crs is not None and coll_crs != bbox_crs:
                bbox = self.transform_bbox_crs(
                    bbox, bbox_crs, int(coll_crs), wsg84_order=wsg84_order
                )
                bbox_crs = coll_crs
            headers = {"Accept": "application/vnd.pgrst.object+json"}

            r = self._post(
                "/rpc/geodb_count_by_bbox",
                headers=headers,
                payload={
                    "collection": dn,
                    "minx": bbox[0],
                    "miny": bbox[1],
                    "maxx": bbox[2],
                    "maxy": bbox[3],
                    "comparison_mode": comparison_mode,
                    "bbox_crs": bbox_crs,
                    "where": where,
                    "op": op,
                },
            )

            js = r.json()["src"]
            if js:
                srid = self.get_collection_srid(collection, database)
                return self._df_from_json(js, srid)
            else:
                return GeoDataFrame(columns=["Empty Result"])
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=True)

    def head_collection(
        self, collection: str, num_lines: int = 10, database: Optional[str] = None
    ) -> Union[GeoDataFrame, DataFrame]:
        """
        Get the first num_lines of a collection.

        Args:
            collection (str): The collection's name
            num_lines (int): The number of line to return
            database (str): The name of the database the collection resides in [current database]

        Returns:
            GeoDataFrame or DataFrame: results

        Raises:
            HttpError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.head_collection(collection='[MyCollection]', num_lines=10)

        """

        return self.get_collection(
            collection=collection, query=f"limit={num_lines}", database=database
        )

    def get_collection(
        self,
        collection: str,
        query: Optional[str] = None,
        database: Optional[str] = None,
        limit: int = None,
        offset: int = 0,
    ) -> Union[GeoDataFrame, DataFrame]:
        """
        Query a collection.

        Args:
            collection (str): The collection's name.
            query (str): A query. Follow the http://postgrest.org/en/v6.0/api.html query convention.
            database (str): The name of the database the collection resides in [current database].
            limit (int): The maximum number of rows to be returned.
            offset (int): Offset (start) of rows to return. Used in combination with limit.

        Returns:
            GeoDataFrame or DataFrame: results

        Raises:
            HttpError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> geodb.get_collection(collection='[MyCollection]', query='id=ge.1000')

        """

        srid = self.get_collection_srid(collection=collection, database=database)

        tab_prefix = database or self.database
        dn = f"{tab_prefix}_{collection}"

        try:
            actual_query = query if query else ""
            if limit or offset:
                actual_query = f"{query}&" if query else ""
                actual_query = f"{actual_query}limit={limit}&offset={offset}"

            if actual_query:
                r = self._get(f"/{dn}?{actual_query}")
            else:
                r = self._get(f"/{dn}")

            js = r.json()

            if js:
                return self._df_from_json(js, srid)
            else:
                return DataFrame(columns=["Empty Result"])
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=True)

    # noinspection SqlDialectInspection,SqlNoDataSourceInspection,SqlInjection
    def get_collection_pg(
        self,
        collection: str,
        select: str = "*",
        where: Optional[str] = None,
        group: Optional[str] = None,
        order: Optional[str] = None,
        limit: Optional[int] = None,
        offset: Optional[int] = None,
        database: Optional[str] = None,
    ) -> Union[GeoDataFrame, DataFrame]:
        """

        Args:
            collection (str): The name of the collection to query
            select (str): Properties (columns) to return. Can contain aggregation functions
            where (Optional[str]): SQL WHERE statement
            group (Optional[str]): SQL GROUP statement
            order (Optional[str]): SQL ORDER statement
            limit (Optional[int]): Limit for paging
            offset (Optional[int]): Offset (start) of rows to return. Used in combination with limit.
            database (str): The name of the database the collection resides in [current database]

        Returns:
            GeoDataFrame or DataFrame: results

        Raises:
            HttpError: When the database raises an error

        Examples:
            >>> geodb = GeoDBClient()
            >>> df = geodb.get_collection_pg(collection='[MyCollection]', where='raba_id=1410', group='d_od', \
                select='COUNT(d_od) as ct, d_od')
        """

        tab_prefix = database or self.database
        dn = f"{tab_prefix}_{collection}"

        self._raise_for_collection_exists(collection=collection, database=database)
        self._raise_for_stored_procedure_exists("geodb_get_pg")

        headers = {"Accept": "application/vnd.pgrst.object+json"}

        try:
            r = self._post(
                "/rpc/geodb_get_pg",
                headers=headers,
                payload={
                    "select": select,
                    "where": where,
                    "group": group,
                    "limit": limit,
                    "order": order,
                    "offset": offset,
                    "collection": dn,
                },
            )
            r.raise_for_status()

            js = r.json()["src"]

            if js:
                srid = self.get_collection_srid(collection, database)
                return self._df_from_json(js, srid)
            else:
                return DataFrame(columns=["Empty Result"])
        except GeoDBError as e:
            return self._maybe_raise(e, return_df=True)

    def create_index(self, collection: str, prop: str, database: str = None) -> Message:
        """
        Creates a new index on the given collection and the given property.
        This may drastically speed up your queries, but adding too many
        indexes on a collection might also hamper its performance. Please use
        with care, and use only if you know what you are doing.

        In case you are doing lots of geographical queries, you'll probably
        want to add an index to your geometry column like this:

            >>> geodb = GeoDBClient()
            >>> geodb.create_index(collection='[MyCollection]',
                                   prop='geometry')

        Note that you may remove your indexes using `remove_index`.

        Args:
            collection (str): The collection's name
            prop (str): The name of the property to add an index to.
                        Use `get_collection_info` to get the list of
                        properties for a collection.
            database (str): The name of the database the collection resides
                            in [current database].
        Returns:
            A message if the index was successfully created.
        Raises:
            GeoDBError if the index already exists.
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        path = "/rpc/geodb_create_index"
        payload = {
            "collection": dn,
            "property": prop,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.INDEX_CREATED, "table {dn} and property {prop}")
        return Message(f"Created new index on table {dn} and property {prop}.")

    def show_indexes(self, collection: str, database: str = None) -> DataFrame:
        """
        Shows the indexes on the given collection.

        Args:
            collection (str): The collection's name
            database (str): The name of the database the collection resides
                            in [current database].
        Returns:
            A dataframe containing the list of indexes for the given
            collection.
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        path = "/rpc/geodb_show_indexes"
        payload = {
            "collection": dn,
        }

        r = self._post(path=path, payload=payload)
        return DataFrame(r.json())

    def remove_index(self, collection: str, prop: str, database: str = None) -> Message:
        """
        Removes the index on the given collection and the given property.

        Args:
            collection (str): The collection's name
            prop (str): The name of the property to add an index to.
            database (str): The name of the database the collection resides
                            in [current database].
        Returns:
            A message if the index was successfully removed.
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        path = "/rpc/geodb_drop_index"
        payload = {
            "collection": dn,
            "property": prop,
        }

        self._log_event(EventType.INDEX_DROPPED, "table {dn} and property {prop}")

        self._post(path=path, payload=payload)
        return Message(f"Removed index from table {dn} and property {prop}.")

    @property
    def server_url(self) -> str:
        """
        Get URL of the geoDB server.

        Returns:
            str: The URL of the geoDB REST service
        """
        return self._server_url

    def get_collection_srid(
        self, collection: str, database: Optional[str] = None
    ) -> Optional[Union[str, type(None), Message]]:
        """
        Get the SRID of a collection.

        Args:
            collection (str): The collection's name
            database (str): The name of the database the collection resides in [current database]

        Returns:
            The name of the SRID
        """
        tab_prefix = database or self.database
        dn = f"{tab_prefix}_{collection}"

        try:
            r = self._post(
                path="/rpc/geodb_get_collection_srid",
                payload={"collection": dn},
                raise_for_status=False,
            )

            if r.status_code == 200:
                js = r.json()[0]["src"][0]

                if js:
                    return js["srid"]

            return None
        except GeoDBError as e:
            return self._maybe_raise(e)

    def _df_from_json(
        self, js: Dict, srid: Optional[int] = None
    ) -> Union[GeoDataFrame, DataFrame]:
        """
        Converts wkb geometry string to wkt from a PostGREST JSON result.
        Args:
            js (Dict): The geometries to be converted
            srid (Optional[int]):.

        Returns:
            GeoDataFrame, DataFrame

        """
        if js is None:
            return DataFrame()

        data = [self._convert_geo(row) for row in js]

        gpdf = gpd.GeoDataFrame(data)

        if "geometry" in gpdf:
            crs = f"EPSG:{srid}" if srid else None
            gpdf.crs = crs
            return gpdf.set_geometry("geometry")
        else:
            return DataFrame(gpdf)

    def _get_full_url(self, path: str) -> str:
        """

        Args:
            path (str): PostgREST API path

        Returns:
            str: Full URL and path
        """

        server_url = self._server_url
        server_port = self._server_port

        if "services/xcube_geoserv" in path:
            server_url = self._gs_server_url
            server_port = self._gs_server_port

        if self._use_winchester_gs and "geodb_geoserver" in path:
            server_url = self._gs_server_url
            server_port = None

        if server_port:
            return f"{server_url}:{server_port}{path}"
        else:
            return f"{server_url}{path}"

    # noinspection PyMethodMayBeStatic
    def _convert_geo(self, row: Dict) -> Dict:
        """

        Args:
            row: A row of the PostgREST result

        Returns:
            Dict: The input row of the PostgREST result with its geometry
                  converted to wkt
        """

        if "geometry" in row:
            if type(row["geometry"]) == dict and "coordinates" in row["geometry"]:
                geom = shape(row["geometry"])
                row["geometry"] = geom
            else:
                row["geometry"] = wkb.loads(row["geometry"], hex=True)
        return row

    def publish_gs(self, collection: str, database: Optional[str] = None):
        """
        Publishes collection to a BC geoservice (geoserver instance). Requires
        access registration.

        Args:
            collection (str): Name of the collection
            database (Optional[str]): Name of the database. Defaults to user
                                    database

        Returns:
            Dict

        """
        database = database or self.database

        try:
            if self._use_winchester_gs:
                r = self._put(
                    path=f"/geodb_geoserver/{database}/collections/",
                    payload={"collection_id": collection},
                )
            else:
                r = self._put(
                    path=f"/api/v2/services/xcube_geoserv/databases/"
                    f"{database}/collections",
                    payload={"collection_id": collection},
                )
            self._log_event(
                EventType.PUBLISHED_GS, f"collection {database}_{collection}"
            )
            return r.json()
        except GeoDBError as e:
            return self._maybe_raise(e)

    def get_all_published_gs(
        self, database: Optional[str] = None
    ) -> Union[Sequence, Message]:
        """

        Args:
            database (str): The database to list collections from a database which are published via geoserver

        Returns:
            A Dataframe of collection names

        """

        path = (
            "/api/v2/services/xcube_geoserv/collections" if database is None else None
        )

        try:
            r = self._get(path=path)
            js = r.json()
            if js:
                return DataFrame.from_dict(js)
            else:
                return DataFrame(columns=["collection"])
        except GeoDBError as e:
            return self._maybe_raise(e)

    def get_published_gs(
        self, database: Optional[str] = None
    ) -> Union[Sequence, Message]:
        """

        Args:
            database (str): The database to list collections from a database which are published via geoserver

        Returns:
            A Dataframe of collection names

        Examples:
            >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
            >>> geodb.get_published_gs()
                owner	                        database	                    collection
            0	geodb_9bfgsdfg-453f-445b-a459	geodb_9bfgsdfg-453f-445b-a459	land_use

        """

        database = database or self._database

        if self._use_winchester_gs:
            path = f"/geodb_geoserver/{database}/collections"
        else:
            path = f"/api/v2/services/xcube_geoserv/databases/{database}/collections"

        try:
            r = self._get(path=path)
            js = r.json()
            if js:
                return DataFrame.from_dict(js)
            else:
                return DataFrame(columns=["collection"])
        except GeoDBError as e:
            return self._maybe_raise(e)

    def unpublish_gs(self, collection: str, database: str):
        """
        'Unpublishes' collection from a BC geoservice (geoserver instance).
        Requires access registration.

        Args:
            collection (str): Name of the collection
            database (Optional[str]): Name of the database. Defaults to user
                                      database

        Returns:
            Dict

        """

        database = database or self._database

        try:
            if self._use_winchester_gs:
                self._delete(
                    path=f"/geodb_geoserver/" f"{database}/collections/{collection}"
                )
            else:
                self._delete(
                    path=f"/api/v2/services/xcube_geoserv/databases/"
                    f"{database}/collections/{collection}"
                )
            self._log_event(
                EventType.UNPUBLISHED_GS, f"collection {database}_{collection}"
            )
            return Message(
                f"Collection {collection} in database {database} "
                f"deleted from Geoservice"
            )
        except GeoDBError as e:
            return self._maybe_raise(e)

    def create_group(self, group_name: str) -> Message:
        """
        Creates a new group with the given name, and makes the current user
        admin of that group: the current user can now add or remove users to
        and from the group, and all group users can publish or unpublish their
        collections to or from the group. Per default, no collection is
        published to the group.
        This function is restricted to users with a subscription of type
        'manage' (or related).

        Args:
            group_name (str): Name of the group to create.

        Returns:
            A message if the group was successfully created.

        Raises:
            GeoDBError if the group already exists.
        """
        path = "/rpc/geodb_create_role"
        payload = {
            "user_name": self.whoami,
            "user_group": group_name,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.GROUP_CREATED, group_name)
        return Message(f"Created new group {group_name}.")

    def add_user_to_group(self, user: str, group: str) -> Message:
        """
        Adds the user to the given group.

        Args:
            user (str): Name of the user.
            group (str): Name of the group.

        Returns:
            A message if the user was added to the group.

        Raises:
            GeoDBError if (1) the user does not exist, (2) the group does not
            exist, (3) the current user does not have
            sufficient rights to add the user to the group.
        """

        path = "/rpc/geodb_group_grant"
        payload = {
            "user_name": user,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.GROUP_ADDED, f"{user}, {group}")
        return Message(f"Added user {user} to {group}")

    def remove_user_from_group(self, user: str, group: str) -> Message:
        """
        Removes the user from the given group.

        Args:
            user (str): Name of the user.
            group (str): Name of the group.

        Returns:
            A message if the user was removed from the group.

        Raises:
            GeoDBError if (1) the user does not exist, (2) the group does not
            exist, (3) the current user does not have
            sufficient rights to remove the user from the group.
        """

        path = "/rpc/geodb_group_revoke"
        payload = {
            "user_name": user,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.GROUP_REMOVED, f"{user}, {group}")
        return Message(f"Removed user {user} from {group}")

    def publish_collection_to_group(
        self, collection: str, group: str, database: Optional[str] = None
    ) -> Message:
        """
        Publishes the collection to the given group. Group members get read
        and write access to the collection; they
        cannot publish the collection to other users or groups.
        This is only allowed if the current user is the owner of the
        collection.

        Args:
            collection (str): The collection's name
            group (str): Name of the group.
            database (str): The name of the database the collection resides
            in [current database].

        Returns:
            A message if the collection was published to the group.

        Raises:
            GeoDBError if (1) the collection does not exist, (2) the group
            does not exist,
            (3) the current user is not the owner of the collection.
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        if not self._is_owner_of(dn):
            raise GeoDBError(
                f"User {self.whoami} must be owner of collection " f"{dn} to publish."
            )

        path = "/rpc/geodb_group_publish_collection"
        payload = {
            "collection": dn,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.PUBLISHED_GROUP, f"{collection}, {group}")
        return Message(
            f"Published collection {collection} in database "
            f"{database} to group {group}."
        )

    def unpublish_collection_from_group(
        self, collection: str, group: str, database: Optional[str] = None
    ) -> Message:
        """
        Unpublishes the collection from the given group.

        Args:
            collection (str): The collection's name
            database (str): The name of the database the collection resides
            in [current database].
            group (str): Name of the group.

        Returns:
            A message if the collection was unpublished from the group.

        Raises:
            GeoDBError if (1) the collection does not exist, (2) the group
            does not exist,
            (3) the current user is not the owner of the collection.
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        if not self._is_owner_of(dn):
            raise GeoDBError(
                f"User {self.whoami} must be owner of " f"collection {dn} to unpublish."
            )

        path = "/rpc/geodb_group_unpublish_collection"
        payload = {
            "collection": dn,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.UNPUBLISHED_GROUP, f"{collection}, {group}")
        return Message(
            f"Unpublished collection {collection} in database "
            f"{database} from group {group}."
        )

    def publish_database_to_group(
        self, group: str, database: Optional[str] = None
    ) -> Message:
        """
        Publishes the database to the given group and enables group users to write into the same database.
        For example, if some user A creates the database `someproject`, users that share a group G with A are
        allowed to create new collections in that database (like `someproject_insitudata`) if A publishes the database
        to the group G. Group users shall not, however, be allowed to read or write any existing collection in the
        database; this needs extra permission by the group admin, using the already existing function
        `publish_collection_to_group`.

        Args:
            database (str): The name of the database to publish. Default: the username.
            group (str): Name of the group.
        """
        database = database or self.database
        dn = f"{database}_dummy"
        if not self._is_owner_of(dn):
            raise GeoDBError(
                f"User {self.whoami} must be owner of database "
                f"{database} to publish."
            )

        path = "/rpc/geodb_group_publish_database"
        payload = {
            "database": database,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.PUBLISHED_DATABASE, f"{database}, {group}")
        return Message(f"Published database {database} to group {group}.")

    def unpublish_database_from_group(
        self, group: str, database: Optional[str] = None
    ) -> Message:
        """
        Unpublishes the database from the given group.

        Args:
            database (str): The name of the database to unpublish. Default: the username.
            group (str): Name of the group.
        """
        database = database or self.database
        dn = f"{database}_dummy"
        if not self._is_owner_of(dn):
            raise GeoDBError(
                f"User {self.whoami} must be owner of database "
                f"{database} to unpublish."
            )

        path = "/rpc/geodb_group_unpublish_database"
        payload = {
            "database": database,
            "user_group": group,
        }

        self._post(path=path, payload=payload)
        self._log_event(EventType.UNPUBLISHED_DATABASE, f"{database}, {group}")
        return Message(f"Unpublished database {database} from group {group}.")

    def get_my_groups(self):
        """
        Returns the different group memberships of the current user.

        Returns:
            The different group memberships of the current user.
        """
        path = "/rpc/geodb_get_user_roles"
        names = self._post(path=path, payload={"user_name": self.whoami}).json()[0][
            "src"
        ]
        return sorted(
            [name["rolname"] for name in names if not name["rolname"] == self.whoami]
        )

    def get_group_users(self, group: str) -> List:
        """
        Returns the users that are member of the given group.

        Returns:
            the users that are member of the given group.
        """
        path = "/rpc/geodb_get_group_users"
        result = self._post(path=path, payload={"group_name": group}).json()
        names = result[0]["res"]
        return sorted([name["rolname"] for name in names])

    def get_access_rights(
        self, collection: str, database: Optional[str] = None
    ) -> Dict:
        """
        Returns the access rights on the given collection.

        Returns:
            The access rights on the collection of the current user and all
            groups the user is in.

        Raises:
            GeoDBError if the collection does not exist
        """

        database = database or self.database
        dn = f"{database}_{collection}"

        path = "/rpc/geodb_get_grants"
        result = self._post(path=path, payload={"collection": dn}).json()
        df = DataFrame(result[0]["res"])
        df = df.groupby("grantee")["privilege_type"].apply(list)
        return df.to_dict()

    def _is_owner_of(self, dn) -> bool:
        path = "/rpc/geodb_user_allowed"
        payload = {
            "collection": dn,
            "usr": self.whoami,
        }
        r = self._post(path=path, payload=payload)
        return int(r.text) > 0

    @property
    def auth_access_token(self) -> str:
        """
        Get the user's access token.

        Returns:
            The current authentication access_token

        Raises:
            GeoDBError on missing ipython shell
        """

        access_token_uri = self._auth_access_token_uri

        return (
            self._auth_access_token
            or self._get_geodb_client_credentials_access_token(
                token_uri=access_token_uri
            )
        )

    @cached_property
    def _use_winchester_gs(self) -> bool:
        try:
            # check if Winchester is the interface to the Geoserver:
            # extract base URL from the authentication URL and retrieve the server's meta
            # information, look for 'winchester' in its list of APIs. Returns "False" if
            # the meta information is structured differently, or does not contain
            # the 'winchester'-API.
            p = urlparse(self._auth_domain)
            url = f"{p.scheme}://{p.netloc}"
            r = requests.get(url)
            apis = json.loads(r.content.decode())["apis"]
            for api in apis:
                if "winchester" in api["name"]:
                    return True
        except:
            pass
        return False

    def refresh_auth_access_token(self):
        """
        Refresh the authentication token.

        """
        self._auth_access_token = None

    def _raise_for_invalid_password_cfg(self) -> bool:
        """
        Raise when the password configuration is wrong.

        Returns:
             True on success

        Raises:
            GeoDBError on invalid configuration
        """
        if (
            self._auth_username
            and self._auth_password
            and self._auth_client_id
            and self._auth_mode == "password"
        ):
            return True
        else:
            raise GeoDBError("System: Invalid password flow configuration")

    def _raise_for_invalid_client_credentials_cfg(self) -> bool:
        """
        Raise when the client-credentials configuration is wrong.

        Returns:
             True on success

        Raises:
            GeoDBError on invalid configuration
        """
        if (
            self._auth_client_id
            and self._auth_client_secret
            and self._auth_aud
            and self._auth_mode == "client-credentials"
        ):
            return True
        else:
            raise GeoDBError("System: Invalid client_credentials configuration.")

    def _get_geodb_client_credentials_access_token(
        self, token_uri: str = "/oauth/token", is_json: bool = True
    ) -> str:
        """
        Get access token from client credentials

        Args:
            token_uri (str): oauth2 token URI
            is_json: whether the request has to be of content type json

        Returns:
             An access token

        Raises:
            GeoDBError, HttpError
        """

        if self._auth_mode == "client-credentials":
            self._raise_for_invalid_client_credentials_cfg()
            payload = {
                "client_id": self._auth_client_id,
                "client_secret": self._auth_client_secret,
                "audience": self._auth_aud,
                "grant_type": "client_credentials",
            }
            headers = {"content-type": "application/json"} if is_json else None
            r = requests.post(
                self._auth_domain + token_uri, json=payload, headers=headers
            )
        elif self._auth_mode == "password":
            self._raise_for_invalid_password_cfg()
            payload = {
                "client_id": self._auth_client_id,
                "username": self._auth_username,
                "password": self._auth_password,
                "grant_type": "password",
            }

            if self._auth_aud:
                payload["audience"] = self._auth_aud
            if self._auth_client_secret:
                payload["client_secret"] = self._auth_client_secret

            headers = {"content-type": "application/x-www-form-urlencoded"}
            r = requests.post(
                self._auth_domain + token_uri, data=payload, headers=headers
            )
        else:
            raise GeoDBError("System Error: auth mode unknown.")

        r.raise_for_status()

        data = r.json()

        try:
            self._auth_access_token = data["access_token"]
            return data["access_token"]
        except KeyError:
            raise GeoDBError(
                "The authorization request did not return an access token."
            )

    def collection_exists(self, collection: str, database: str) -> bool:
        """
        Checks whether a collection exists

        Args:
            collection (str): The collection's name
            database (str): The name of the database the collection resides in [current database]
        Returns:
             Whether the collection exists
        """
        database = database or self.database

        try:
            self.head_collection(collection, database=database)
        except GeoDBError:
            return False

        return True

    def _raise_for_collection_exists(self, collection: str, database: str) -> bool:
        """

        Args:
            collection (str): Name of the collection

        Returns:
            Whether the collection exists

        Raises:
            GeoDBError if the collection does not exist
        """

        collection_exists = self.collection_exists(collection, database=database)
        if collection_exists is True:
            return True
        else:
            raise GeoDBError(f"Collection {collection} does not exist")

    def _raise_for_stored_procedure_exists(self, stored_procedure: str) -> bool:
        """

        Args:
            stored_procedure (str): Name of the stored procedure

        Returns:
            Whether the stored procedure exists

        Raises:
            GeoDBError if the stored procedure does not exist
        """
        if f"/rpc/{stored_procedure}" in self.capabilities["paths"]:
            return True
        else:
            raise GeoDBError(f"Stored procedure {stored_procedure} does not exist")

    def get_event_log(
        self,
        collection: Optional[str] = None,
        database: Optional[str] = None,
        event_type: Optional[EventType] = None,
    ) -> DataFrame:
        """
        Args:
            collection (str):       The name of the collection for which to get
                                    the event log; if None, all collections are
                                    returned
            database (str):         The database of the collection
            event_type (EventType): The type of the events for which to get
                                    the event log; if None, all events are
                                    returned

        Returns:
            Whether the stored procedure exists

        Raises:
            GeoDBError if the stored procedure does not exist
        """
        path = "/rpc/get_geodb_eventlog"
        if event_type or collection or database:
            path = f"{path}?"
        if event_type:
            path = f"{path}event_type={event_type}"

        if collection or database:
            database = database or self.database
            collection = collection or "%"
            dn = f"{database}_{collection}"
            path = f"{path}&collection={dn}"

        try:
            result = self._get(path=path).json()[0]
            if result["events"]:
                return DataFrame.from_dict(result["events"])
            else:
                return DataFrame(columns=["event_type", "message", "username", "date"])
        except GeoDBError as e:
            return self._maybe_raise(e)

    def _log_event(self, event_type: str, message: str) -> requests.models.Response:
        event = {"event_type": event_type, "message": message, "user": self.whoami}
        return self._post(
            path="/rpc/geodb_log_event",
            payload=event,
            headers={"Prefer": "params=single-object"},
        )

    @staticmethod
    def setup(
        host: Optional[str] = None,
        port: Optional[str] = None,
        user: Optional[str] = None,
        passwd: Optional[str] = None,
        dbname: Optional[str] = None,
        conn: Optional[any] = None,
    ):
        """
        Sets up  the database. Needs DB credentials and the database user requires CREATE TABLE/FUNCTION grants.
        """
        host = host or os.getenv("GEODB_DB_HOST")
        port = port or os.getenv("GEODB_DB_PORT")
        user = user or os.getenv("GEODB_DB_USER")
        passwd = passwd or os.getenv("GEODB_DB_PASSWD")
        dbname = dbname or os.getenv("GEODB_DB_DBNAME")

        try:
            import psycopg2
        except ImportError:
            raise GeoDBError("You need to install psycopg2 first to run this module.")

        conn = conn or psycopg2.connect(
            host=host, port=port, user=user, password=passwd, dbname=dbname
        )
        cursor = conn.cursor()

        with open(f"xcube_geodb/sql/geodb.sql") as sql_file:
            sql_create = sql_file.read()
            cursor.execute(sql_create)

        conn.commit()

auth_access_token property

Get the user's access token.

Returns:
  • str

    The current authentication access_token

capabilities property

Returns:
  • Dict

    A dictionary of the geoDB PostGrest REST API service's capabilities

database property

Returns:
  • str

    The current database

raise_it property writable

Returns:
  • bool

    The current error message behaviour

server_url property

Get URL of the geoDB server.

Returns:
  • str( str ) –

    The URL of the geoDB REST service

whoami property

Returns:
  • str

    The current database user

add_properties(collection, properties, database=None)

Add properties to a collection.

Parameters:
  • collection (str) –

    The name of the collection to add properties to

  • properties (Dict) –

    Property definitions as dictionary

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns: Message: Whether the operation succeeded

Examples:

>>> properties = {'[MyName1]': '[PostgresType1]',                               '[MyName2]': '[PostgresType2]'}
>>> geodb = GeoDBClient()
>>> geodb.add_property(collection='[MyCollection]',                                    properties=properties)
Source code in xcube_geodb\core\geodb.py
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def add_properties(
    self, collection: str, properties: Dict, database: Optional[str] = None
) -> Message:
    """
    Add properties to a collection.

    Args:
        collection (str): The name of the collection to add properties to
        properties (Dict): Property definitions as dictionary
        database (str): The database the collection resides in [current
                        database]
    Returns:
        Message: Whether the operation succeeded

    Examples:
        >>> properties = {'[MyName1]': '[PostgresType1]', \
                          '[MyName2]': '[PostgresType2]'}
        >>> geodb = GeoDBClient()
        >>> geodb.add_property(collection='[MyCollection]', \
                               properties=properties)
    """

    self._refresh_capabilities()

    database = database or self.database
    dn = database + "_" + collection

    try:
        self._post(
            path="/rpc/geodb_add_properties",
            payload={"collection": dn, "properties": properties},
        )
        for prop_name in properties:
            prop_type = properties[prop_name]
            self._log_event(
                EventType.PROPERTY_ADDED,
                f"{{name: {prop_name}, " f"type: {prop_type}}} to collection {dn}",
            )
        return Message(f"Properties added")
    except GeoDBError as e:
        return self._maybe_raise(e)

add_property(collection, prop, typ, database=None)

Add a property to an existing collection.

Parameters:
  • collection (str) –

    The name of the collection to add a property to

  • prop (str) –

    Property name

  • typ (str) –

    The data type of the property (Postgres type)

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns:
  • Message( Message ) –

    Success message

Examples:

>>> geodb = GeoDBClient()
>>> geodb.add_property(collection='[MyCollection]',                 name='[MyProperty]', type='[PostgresType]')
Source code in xcube_geodb\core\geodb.py
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def add_property(
    self, collection: str, prop: str, typ: str, database: Optional[str] = None
) -> Message:
    """
    Add a property to an existing collection.

    Args:
        collection (str): The name of the collection to add a property to
        prop (str): Property name
        typ (str): The data type of the property (Postgres type)
        database (str): The database the collection resides in [current
                        database]

    Returns:
        Message: Success message

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.add_property(collection='[MyCollection]', \
            name='[MyProperty]', type='[PostgresType]')
    """
    prop = {prop: typ}

    return self.add_properties(
        collection=collection, properties=prop, database=database
    )

add_user_to_group(user, group)

Adds the user to the given group.

Parameters:
  • user (str) –

    Name of the user.

  • group (str) –

    Name of the group.

Returns:
  • Message

    A message if the user was added to the group.

Source code in xcube_geodb\core\geodb.py
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def add_user_to_group(self, user: str, group: str) -> Message:
    """
    Adds the user to the given group.

    Args:
        user (str): Name of the user.
        group (str): Name of the group.

    Returns:
        A message if the user was added to the group.

    Raises:
        GeoDBError if (1) the user does not exist, (2) the group does not
        exist, (3) the current user does not have
        sufficient rights to add the user to the group.
    """

    path = "/rpc/geodb_group_grant"
    payload = {
        "user_name": user,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.GROUP_ADDED, f"{user}, {group}")
    return Message(f"Added user {user} to {group}")

collection_exists(collection, database)

Checks whether a collection exists

Parameters:
  • collection (str) –

    The collection's name

  • database (str) –

    The name of the database the collection resides in [current database]

Returns: Whether the collection exists

Source code in xcube_geodb\core\geodb.py
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def collection_exists(self, collection: str, database: str) -> bool:
    """
    Checks whether a collection exists

    Args:
        collection (str): The collection's name
        database (str): The name of the database the collection resides in [current database]
    Returns:
         Whether the collection exists
    """
    database = database or self.database

    try:
        self.head_collection(collection, database=database)
    except GeoDBError:
        return False

    return True

copy_collection(collection, new_collection, new_database, database=None)

Parameters:
  • collection (str) –

    The name of the collection to be copied

  • new_collection (str) –

    The new name of the collection

  • database (str, default: None ) –

    The database the collection resides in [current database]

  • new_database (str) –

    The database the collection will be copied to

Examples:

>>> geodb = GeoDBClient()
>>> geodb.copy_collection('col', 'col_new', 'target_db',
                          'source_db')
Source code in xcube_geodb\core\geodb.py
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def copy_collection(
    self,
    collection: str,
    new_collection: str,
    new_database: str,
    database: Optional[str] = None,
):
    """

    Args:
        collection (str): The name of the collection to be copied
        new_collection (str): The new name of the collection
        database (str): The database the collection resides in
                        [current database]
        new_database (str): The database the collection will be copied to

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.copy_collection('col', 'col_new', 'target_db',
                                  'source_db')
    """

    database = database or self._database
    from_dn = f"{database}_{collection}"
    to_dn = f"{new_database}_{new_collection}"

    try:
        self._post(
            path="/rpc/geodb_copy_collection",
            payload={"old_collection": from_dn, "new_collection": to_dn},
        )

        self._log_event(EventType.COPIED, f"collection {from_dn} to {to_dn}")
        return Message(f"Collection copied from {from_dn} to {to_dn}")
    except GeoDBError as e:
        return self._maybe_raise(e)

count_collection_by_bbox(collection, bbox, comparison_mode='contains', bbox_crs=4326, where='id>-1', op='AND', database=None, wsg84_order='lat_lon')

Query the database by a bounding box and return the count. Please be careful with the bbox crs. The easiest is using the same crs as the collection. However, if the bbox crs differs from the collection, the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs. You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into this method.

Parameters:
  • collection (str) –

    The name of the collection to be quried

  • bbox (Tuple[float, float, float, float]) –

    minx, miny, maxx, maxy

  • comparison_mode (str, default: 'contains' ) –

    Filter mode. Can be 'contains' or 'within' ['contains']

  • bbox_crs ((int, str), default: 4326 ) –

    Projection code. [4326]

  • op (str, default: 'AND' ) –

    Operator for where (AND, OR) ['AND']

  • where (str, default: 'id>-1' ) –

    Additional SQL where statement to further filter the collection

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

  • wsg84_order (str, default: 'lat_lon' ) –

    WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if

Returns:
  • Union[GeoDataFrame, DataFrame]

    A GeoPandas Dataframe

Raises:
  • HttpError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> geodb.count_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0,                 102486.299), comparison_mode="contains", bbox_crs=3794)
Source code in xcube_geodb\core\geodb.py
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def count_collection_by_bbox(
    self,
    collection: str,
    bbox: Tuple[float, float, float, float],
    comparison_mode: str = "contains",
    bbox_crs: Union[int, str] = 4326,
    where: Optional[str] = "id>-1",
    op: str = "AND",
    database: Optional[str] = None,
    wsg84_order="lat_lon",
) -> Union[GeoDataFrame, DataFrame]:
    """
    Query the database by a bounding box and return the count. Please be careful with the bbox crs. The easiest is
    using the same crs as the collection. However, if the bbox crs differs from the collection,
    the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs.
    You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into
    this method.

    Args:
        collection (str): The name of the collection to be quried
        bbox (Tuple[float, float, float, float]): minx, miny, maxx, maxy
        comparison_mode (str): Filter mode. Can be 'contains' or 'within' ['contains']
        bbox_crs (int, str): Projection code. [4326]
        op (str): Operator for where (AND, OR) ['AND']
        where (str): Additional SQL where statement to further filter the collection
        database (str): The name of the database the collection resides in [current database]
        wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
        Lon Lat is used.

    Returns:
        A GeoPandas Dataframe

    Raises:
        HttpError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.count_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0, \
            102486.299), comparison_mode="contains", bbox_crs=3794)
    """
    bbox_crs = check_crs(bbox_crs)
    database = database or self.database
    dn = database + "_" + collection

    self._raise_for_collection_exists(collection=collection, database=database)
    self._raise_for_stored_procedure_exists("geodb_get_by_bbox")

    coll_crs = self.get_collection_srid(collection=collection, database=database)

    try:
        if coll_crs is not None and coll_crs != bbox_crs:
            bbox = self.transform_bbox_crs(
                bbox, bbox_crs, int(coll_crs), wsg84_order=wsg84_order
            )
            bbox_crs = coll_crs
        headers = {"Accept": "application/vnd.pgrst.object+json"}

        r = self._post(
            "/rpc/geodb_count_by_bbox",
            headers=headers,
            payload={
                "collection": dn,
                "minx": bbox[0],
                "miny": bbox[1],
                "maxx": bbox[2],
                "maxy": bbox[3],
                "comparison_mode": comparison_mode,
                "bbox_crs": bbox_crs,
                "where": where,
                "op": op,
            },
        )

        js = r.json()["src"]
        if js:
            srid = self.get_collection_srid(collection, database)
            return self._df_from_json(js, srid)
        else:
            return GeoDataFrame(columns=["Empty Result"])
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=True)

count_collection_rows(collection, database=None, exact_count=False)

Return the number of rows in the given collection. By default, this function returns a rough estimate within the order of magnitude of the actual number; the exact count can also be retrieved, but this may take much longer. Note: in some cases, no estimate can be provided. In such cases, -1 is returned if exact_count == False.

Parameters:
  • collection (str) –

    The name of the collection

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

  • exact_count (bool, default: False ) –

    If True, the actual number of rows will be counted. Default value: false.

Returns:
  • Union[int, Message]

    the number of rows in the given collection, or -1 if exact_count

  • Union[int, Message]

    is False and no estimate could be provided.

Raises:
  • GeoDBError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> geodb.count_collection_rows('my_collection'], exact_count=True)
Source code in xcube_geodb\core\geodb.py
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def count_collection_rows(
    self,
    collection: str,
    database: Optional[str] = None,
    exact_count: Optional[bool] = False,
) -> Union[int, Message]:
    """
    Return the number of rows in the given collection. By default, this
    function returns a rough estimate within the order of magnitude of the
    actual number; the exact count can also be retrieved, but this may take
    much longer.
    Note: in some cases, no estimate can be provided. In such cases,
    -1 is returned if exact_count == False.

    Args:
        collection (str):   The name of the collection
        database (str):     The name of the database the collection resides
                            in [current database]
        exact_count (bool): If True, the actual number of rows will be
                            counted. Default value: false.

    Returns:
        the number of rows in the given collection, or -1 if exact_count
        is False and no estimate could be provided.

    Raises:
        GeoDBError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.count_collection_rows('my_collection'], exact_count=True)
    """

    database = database or self.database
    dn = database + "_" + collection

    try:
        if exact_count:
            r = self._post(
                "/rpc/geodb_count_collection", payload={"collection": dn}
            )
        else:
            r = self._post(
                "/rpc/geodb_estimate_collection_count", payload={"collection": dn}
            )
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=False)

    return int(r.text)

create_collection(collection, properties, crs=4326, database=None, clear=False)

Create collections from a dictionary

Parameters:
  • collection (str) –

    Name of the collection to be created

  • clear (bool, default: False ) –

    Whether to delete existing collections

  • properties (Dict) –

    Property definitions for the collection

  • database (str, default: None ) –

    Database to use for creating the collection

  • crs (Union[int, str], default: 4326 ) –

    sfdv

Returns:
  • bool( Dict ) –

    Success

Examples:

>>> geodb = GeoDBClient()
>>> properties = {'[MyProp1]': 'float', '[MyProp2]': 'date'}
>>> geodb.create_collection(collection='[MyCollection]', crs=3794, properties=properties)
Source code in xcube_geodb\core\geodb.py
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def create_collection(
    self,
    collection: str,
    properties: Dict,
    crs: Union[int, str] = 4326,
    database: Optional[str] = None,
    clear: bool = False,
) -> Dict:
    """
    Create collections from a dictionary

    Args:
        collection (str): Name of the collection to be created
        clear (bool): Whether to delete existing collections
        properties (Dict): Property definitions for the collection
        database (str): Database to use for creating the collection
        crs: sfdv

    Returns:
        bool: Success

    Examples:
        >>> geodb = GeoDBClient()
        >>> properties = {'[MyProp1]': 'float', '[MyProp2]': 'date'}
        >>> geodb.create_collection(collection='[MyCollection]', crs=3794, properties=properties)
    """
    crs = check_crs(crs)
    collections = {collection: {"properties": properties, "crs": str(crs)}}

    self._refresh_capabilities()

    return self.create_collections(
        collections=collections, database=database, clear=clear
    )

create_collection_if_not_exists(collection, properties, crs=4326, database=None, **kwargs)

Creates a collection only if the collection does not exist already.

Parameters:
  • collection (str) –

    The name of the collection to be created

  • properties (Dict) –

    Properties to be added to the collection

  • crs ((int, str), default: 4326 ) –

    projection

  • database (str, default: None ) –

    The database the collection is to be created in [current database]

  • kwargs

    Placeholder for deprecated parameters

Returns:
  • Collection( Union[Dict, Message] ) –

    Collection info id operation succeeds

  • None( Union[Dict, Message] ) –

    If operation fails

Examples:

See create_collection for an example

Source code in xcube_geodb\core\geodb.py
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def create_collection_if_not_exists(
    self,
    collection: str,
    properties: Dict,
    crs: Union[int, str] = 4326,
    database: Optional[str] = None,
    **kwargs,
) -> Union[Dict, Message]:
    """
    Creates a collection only if the collection does not exist already.

    Args:
        collection (str): The name of the collection to be created
        properties (Dict): Properties to be added to the collection
        crs (int, str): projection
        database (str): The database the collection is to be created in [current database]
        kwargs: Placeholder for deprecated parameters

    Returns:
        Collection:  Collection info id operation succeeds
        None: If operation fails

    Examples:
        See create_collection for an example
    """
    exists = self.collection_exists(collection=collection, database=database)
    if not exists:
        try:
            return self.create_collection(
                collection=collection,
                properties=properties,
                crs=crs,
                database=database,
                **kwargs,
            )
        except GeoDBError as e:
            return self._maybe_raise(e)

create_collections(collections, database=None, clear=False)

Create collections from a dictionary Args: clear (bool): Delete collections prioer to creation collections (Dict): A dictionalry of collections database (str): Database to use for creating the collection

Returns:
  • bool( Union[Dict, Message] ) –

    Success

Examples:

>>> geodb = GeoDBClient()
>>> collections = {'[MyCollection]': {'crs': 1234, 'properties':                     {'[MyProp1]': 'float', '[MyProp2]': 'date'}}}
>>> geodb.create_collections(collections)
Source code in xcube_geodb\core\geodb.py
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def create_collections(
    self, collections: Dict, database: Optional[str] = None, clear: bool = False
) -> Union[Dict, Message]:
    """
    Create collections from a dictionary
    Args:
        clear (bool): Delete collections prioer to creation
        collections (Dict): A dictionalry of collections
        database (str): Database to use for creating the collection

    Returns:
        bool: Success

    Examples:
        >>> geodb = GeoDBClient()
        >>> collections = {'[MyCollection]': {'crs': 1234, 'properties': \
                {'[MyProp1]': 'float', '[MyProp2]': 'date'}}}
        >>> geodb.create_collections(collections)
    """

    for collection in collections:
        if "crs" in collections[collection]:
            collections[collection]["crs"] = check_crs(
                collections[collection]["crs"]
            )
        if clear:
            try:
                self.drop_collection(collection=collection, database=database)
            except GeoDBError:
                pass

    self._refresh_capabilities()

    database = database or self.database

    if not self.database_exists(database):
        return Message("Database does not exist.")

    buffer = {}
    for collection in collections:
        buffer[database + "_" + collection] = collections[collection]

    collections = {"collections": buffer}
    try:
        self._post(path="/rpc/geodb_create_collections", payload=collections)
        for collection in collections["collections"]:
            self._log_event(EventType.CREATED, f"collection {collection}")
        return Message(collections)
    except GeoDBError as e:
        return self._maybe_raise(e)

create_collections_if_not_exist(collections, database=None, **kwargs)

Creates collections only if collections do not exist already.

Parameters:
  • collections (Dict) –

    The name of the collection to be created

  • database (str, default: None ) –

    The database the collection is to be created in [current database]

  • kwargs

    Placeholder for deprecated parameters

Returns:
  • Dict

    List of Collections: List of informations about created collections

Examples:

See create_collections for examples

Source code in xcube_geodb\core\geodb.py
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def create_collections_if_not_exist(
    self, collections: Dict, database: Optional[str] = None, **kwargs
) -> Dict:
    """
    Creates collections only if collections do not exist already.

    Args:
        collections (Dict): The name of the collection to be created
        database (str): The database the collection is to be created in [current database]
        kwargs: Placeholder for deprecated parameters

    Returns:
        List of Collections: List of informations about created collections

    Examples:
        See create_collections for examples
    """
    res = dict()
    for collection in collections:
        exists = self.collection_exists(collection=collection, database=database)
        if exists is None:
            res[collection] = collections[collection]

    return self.create_collections(collections=res, database=database)

create_database(database)

Create a database.

Parameters:
  • database (str) –

    The name of the database to be created

Returns:
  • Message( Message ) –

    A message about the success or failure of the operation

Source code in xcube_geodb\core\geodb.py
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def create_database(self, database: str) -> Message:
    """
    Create a database.

    Args:
        database (str): The name of the database to be created

    Returns:
        Message: A message about the success or failure of the operation

    """

    try:
        self._post(
            path="/rpc/geodb_create_database", payload={"database": database}
        )
        return Message(f"Database {database} created")
    except GeoDBError as e:
        return self._maybe_raise(e)

create_group(group_name)

Creates a new group with the given name, and makes the current user admin of that group: the current user can now add or remove users to and from the group, and all group users can publish or unpublish their collections to or from the group. Per default, no collection is published to the group. This function is restricted to users with a subscription of type 'manage' (or related).

Parameters:
  • group_name (str) –

    Name of the group to create.

Returns:
  • Message

    A message if the group was successfully created.

Source code in xcube_geodb\core\geodb.py
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def create_group(self, group_name: str) -> Message:
    """
    Creates a new group with the given name, and makes the current user
    admin of that group: the current user can now add or remove users to
    and from the group, and all group users can publish or unpublish their
    collections to or from the group. Per default, no collection is
    published to the group.
    This function is restricted to users with a subscription of type
    'manage' (or related).

    Args:
        group_name (str): Name of the group to create.

    Returns:
        A message if the group was successfully created.

    Raises:
        GeoDBError if the group already exists.
    """
    path = "/rpc/geodb_create_role"
    payload = {
        "user_name": self.whoami,
        "user_group": group_name,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.GROUP_CREATED, group_name)
    return Message(f"Created new group {group_name}.")

create_index(collection, prop, database=None)

Creates a new index on the given collection and the given property. This may drastically speed up your queries, but adding too many indexes on a collection might also hamper its performance. Please use with care, and use only if you know what you are doing.

In case you are doing lots of geographical queries, you'll probably want to add an index to your geometry column like this:

>>> geodb = GeoDBClient()
>>> geodb.create_index(collection='[MyCollection]',
                       prop='geometry')

Note that you may remove your indexes using remove_index.

Parameters:
  • collection (str) –

    The collection's name

  • prop (str) –

    The name of the property to add an index to. Use get_collection_info to get the list of properties for a collection.

  • database (str, default: None ) –

    The name of the database the collection resides in [current database].

Returns: A message if the index was successfully created. Raises: GeoDBError if the index already exists.

Source code in xcube_geodb\core\geodb.py
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def create_index(self, collection: str, prop: str, database: str = None) -> Message:
    """
    Creates a new index on the given collection and the given property.
    This may drastically speed up your queries, but adding too many
    indexes on a collection might also hamper its performance. Please use
    with care, and use only if you know what you are doing.

    In case you are doing lots of geographical queries, you'll probably
    want to add an index to your geometry column like this:

        >>> geodb = GeoDBClient()
        >>> geodb.create_index(collection='[MyCollection]',
                               prop='geometry')

    Note that you may remove your indexes using `remove_index`.

    Args:
        collection (str): The collection's name
        prop (str): The name of the property to add an index to.
                    Use `get_collection_info` to get the list of
                    properties for a collection.
        database (str): The name of the database the collection resides
                        in [current database].
    Returns:
        A message if the index was successfully created.
    Raises:
        GeoDBError if the index already exists.
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    path = "/rpc/geodb_create_index"
    payload = {
        "collection": dn,
        "property": prop,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.INDEX_CREATED, "table {dn} and property {prop}")
    return Message(f"Created new index on table {dn} and property {prop}.")

database_exists(database)

Checks whether a database exists.

Parameters:
  • database (str) –

    The name of the database to be checked

Returns:
  • bool( bool ) –

    database exists

Raises:
  • HttpError

    If request fails

Source code in xcube_geodb\core\geodb.py
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def database_exists(self, database: str) -> bool:
    """
    Checks whether a database exists.

    Args:
        database (str): The name of the database to be checked

    Returns:
        bool: database exists

    Raises:
        HttpError: If request fails

    """

    try:
        res = self.get_collection(
            collection="user_databases",
            database="geodb",
            query=f"name=eq.{database}",
        )
        return len(res) > 0
    except GeoDBError as e:
        self._maybe_raise(e)

delete_from_collection(collection, query, database=None)

Delete rows from collection.

Parameters:
  • collection (str) –

    The name of the collection to delete rows from

  • database (str, default: None ) –

    The name of the database to be checked

  • query (str) –

    Filter which records to delete. Follow the https://postgrest.org/en/v6.0/api.html query convention.

Returns: Message: Whether the operation has succeeded

Examples:

>>> geodb = GeoDBClient()
>>> geodb.delete_from_collection('[MyCollection]', 'id=eq.1')
Source code in xcube_geodb\core\geodb.py
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def delete_from_collection(
    self, collection: str, query: str, database: Optional[str] = None
) -> Message:
    """
    Delete rows from collection.

    Args:
        collection (str): The name of the collection to delete rows from
        database (str): The name of the database to be checked
        query (str): Filter which records to delete. Follow the
                     https://postgrest.org/en/v6.0/api.html query convention.
    Returns:
        Message: Whether the operation has succeeded

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.delete_from_collection('[MyCollection]', 'id=eq.1')
    """

    database = database or self.database
    dn = database + "_" + collection

    try:
        self._delete(f"/{dn}?{query}")
        self._log_event(
            EventType.ROWS_DROPPED, f"from collection {dn} where {query}"
        )
        return Message(f"Data from {collection} deleted")
    except GeoDBError as e:
        return self._maybe_raise(e)

drop_collection(collection, database=None)

Parameters:
  • collection (str) –

    Name of the collection to be dropped

  • database (str, default: None ) –

    The database the colections resides in [current database]

Returns:
  • bool( Message ) –

    Success

Examples:

>>> geodb = GeoDBClient()
>>> geodb.drop_collection(collection='[MyCollection]')
Source code in xcube_geodb\core\geodb.py
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def drop_collection(
    self, collection: str, database: Optional[str] = None
) -> Message:
    """

    Args:
        collection (str): Name of the collection to be dropped
        database (str): The database the colections resides in [current database]

    Returns:
        bool: Success

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.drop_collection(collection='[MyCollection]')
    """

    database = database or self.database
    return self.drop_collections(
        collections=[collection], database=database, cascade=True
    )

drop_collections(collections, cascade=False, database=None)

Parameters:
  • database (str, default: None ) –

    The database the colections resides in [current database]

  • collections (Sequence[str]) –

    Collections to be dropped

  • cascade (bool, default: False ) –

    Drop in cascade mode. This can be necessary if e.g. sequences have not been deleted properly

Returns:
  • Message

    Message

Examples:

>>> geodb = GeoDBClient()
>>> geodb.drop_collections(collections=['[MyCollection1]', '[MyCollection2]'])
Source code in xcube_geodb\core\geodb.py
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def drop_collections(
    self,
    collections: Sequence[str],
    cascade: bool = False,
    database: Optional[str] = None,
) -> Message:
    """

    Args:
        database (str): The database the colections resides in [current database]
        collections (Sequence[str]): Collections to be dropped
        cascade (bool): Drop in cascade mode. This can be necessary if e.g. sequences have not been
                        deleted properly

    Returns:
        Message

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.drop_collections(collections=['[MyCollection1]', '[MyCollection2]'])
    """

    self._refresh_capabilities()

    database = database or self.database
    collections = [database + "_" + collection for collection in collections]
    payload = {
        "collections": collections,
        "cascade": "TRUE" if cascade else "FALSE",
    }

    try:
        self._post(path="/rpc/geodb_drop_collections", payload=payload)
        for collection in collections:
            self._log_event(EventType.DROPPED, f"collection {collection}")
        return Message(f"Collection {str(collections)} deleted")
    except GeoDBError as e:
        return self._maybe_raise(e)

drop_properties(collection, properties, database=None)

Drop properties from a collection.

Parameters:
  • collection (str) –

    The name of the collection to delete properties from

  • properties (List) –

    A list containing the property names

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns: Message: Whether the operation succeeded

Examples:

>>> geodb = GeoDBClient()
>>> geodb.drop_properties(collection='MyCollection',                                       properties=['MyProperty1',                                                   'MyProperty2'])
Source code in xcube_geodb\core\geodb.py
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def drop_properties(
    self, collection: str, properties: Sequence[str], database: Optional[str] = None
) -> Message:
    """
    Drop properties from a collection.

    Args:
        collection (str):  The name of the collection to delete properties
                           from
        properties (List): A list containing the property names
        database (str):    The database the collection resides in [current
                           database]
    Returns:
        Message: Whether the operation succeeded

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.drop_properties(collection='MyCollection', \
                                  properties=['MyProperty1', \
                                              'MyProperty2'])
    """

    self._refresh_capabilities()
    database = database or self.database
    collection = database + "_" + collection

    self._raise_for_mandatory_columns(properties)

    self._raise_for_stored_procedure_exists("geodb_drop_properties")

    try:
        self._post(
            path="/rpc/geodb_drop_properties",
            payload={"collection": collection, "properties": properties},
        )
        for prop in properties:
            self._log_event(
                EventType.PROPERTY_DROPPED, f"{prop} from collection {collection}"
            )

        return Message(
            f"Properties {str(properties)} dropped from " f"{collection}"
        )
    except GeoDBError as e:
        return self._maybe_raise(e)

drop_property(collection, prop, database=None, **kwargs)

Drop a property from a collection.

Parameters:
  • collection (str) –

    The name of the collection to drop the property from

  • prop (str) –

    The property to delete

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns:
  • Message( Message ) –

    Whether the operation succeeded

Examples:

>>> geodb = GeoDBClient()
>>> geodb.drop_property(collection='[MyCollection]',                                     prop='[MyProperty]')
Source code in xcube_geodb\core\geodb.py
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def drop_property(
    self, collection: str, prop: str, database: Optional[str] = None, **kwargs
) -> Message:
    """
    Drop a property from a collection.

    Args:
        collection (str): The name of the collection to drop the property from
        prop (str): The property to delete
        database (str): The database the collection resides in [current database]

    Returns:
        Message: Whether the operation succeeded

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.drop_property(collection='[MyCollection]', \
                                prop='[MyProperty]')
    """

    return self.drop_properties(
        collection=collection, properties=[prop], database=database
    )

get_access_rights(collection, database=None)

Returns the access rights on the given collection.

Returns:
  • Dict

    The access rights on the collection of the current user and all

  • Dict

    groups the user is in.

Source code in xcube_geodb\core\geodb.py
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def get_access_rights(
    self, collection: str, database: Optional[str] = None
) -> Dict:
    """
    Returns the access rights on the given collection.

    Returns:
        The access rights on the collection of the current user and all
        groups the user is in.

    Raises:
        GeoDBError if the collection does not exist
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    path = "/rpc/geodb_get_grants"
    result = self._post(path=path, payload={"collection": dn}).json()
    df = DataFrame(result[0]["res"])
    df = df.groupby("grantee")["privilege_type"].apply(list)
    return df.to_dict()

get_all_published_gs(database=None)

Parameters:
  • database (str, default: None ) –

    The database to list collections from a database which are published via geoserver

Returns:
  • Union[Sequence, Message]

    A Dataframe of collection names

Source code in xcube_geodb\core\geodb.py
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def get_all_published_gs(
    self, database: Optional[str] = None
) -> Union[Sequence, Message]:
    """

    Args:
        database (str): The database to list collections from a database which are published via geoserver

    Returns:
        A Dataframe of collection names

    """

    path = (
        "/api/v2/services/xcube_geoserv/collections" if database is None else None
    )

    try:
        r = self._get(path=path)
        js = r.json()
        if js:
            return DataFrame.from_dict(js)
        else:
            return DataFrame(columns=["collection"])
    except GeoDBError as e:
        return self._maybe_raise(e)

get_collection(collection, query=None, database=None, limit=None, offset=0)

Query a collection.

Parameters:
  • collection (str) –

    The collection's name.

  • query (str, default: None ) –

    A query. Follow the http://postgrest.org/en/v6.0/api.html query convention.

  • database (str, default: None ) –

    The name of the database the collection resides in [current database].

  • limit (int, default: None ) –

    The maximum number of rows to be returned.

  • offset (int, default: 0 ) –

    Offset (start) of rows to return. Used in combination with limit.

Returns:
  • Union[GeoDataFrame, DataFrame]

    GeoDataFrame or DataFrame: results

Raises:
  • HttpError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> geodb.get_collection(collection='[MyCollection]', query='id=ge.1000')
Source code in xcube_geodb\core\geodb.py
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def get_collection(
    self,
    collection: str,
    query: Optional[str] = None,
    database: Optional[str] = None,
    limit: int = None,
    offset: int = 0,
) -> Union[GeoDataFrame, DataFrame]:
    """
    Query a collection.

    Args:
        collection (str): The collection's name.
        query (str): A query. Follow the http://postgrest.org/en/v6.0/api.html query convention.
        database (str): The name of the database the collection resides in [current database].
        limit (int): The maximum number of rows to be returned.
        offset (int): Offset (start) of rows to return. Used in combination with limit.

    Returns:
        GeoDataFrame or DataFrame: results

    Raises:
        HttpError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.get_collection(collection='[MyCollection]', query='id=ge.1000')

    """

    srid = self.get_collection_srid(collection=collection, database=database)

    tab_prefix = database or self.database
    dn = f"{tab_prefix}_{collection}"

    try:
        actual_query = query if query else ""
        if limit or offset:
            actual_query = f"{query}&" if query else ""
            actual_query = f"{actual_query}limit={limit}&offset={offset}"

        if actual_query:
            r = self._get(f"/{dn}?{actual_query}")
        else:
            r = self._get(f"/{dn}")

        js = r.json()

        if js:
            return self._df_from_json(js, srid)
        else:
            return DataFrame(columns=["Empty Result"])
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=True)

get_collection_bbox(collection, database=None, exact=False)

Retrieves the bounding box for the collection, i.e. the union of all rows' geometries.

Parameters:
  • collection (str) –

    The name of the collection to return the bounding box for.

  • database (str, default: None ) –

    The database the collection resides in. Default: current database.

  • exact (bool, default: False ) –

    If the exact bbox shall be computed. Warning: This may take much longer. Default: False.

Returns:
  • Union[None, Sequence]

    the bounding box given as tuple xmin, ymin, xmax, ymax or None if

  • Union[None, Sequence]

    collection is empty

Examples:

>>> geodb = GeoDBClient(auth_mode='client-credentials',                                     client_id='***',
                        client_secret='***')
>>> geodb.get_collection_bbox('my_collection')
(-5, 10, 5, 11)
Source code in xcube_geodb\core\geodb.py
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def get_collection_bbox(
    self,
    collection: str,
    database: Optional[str] = None,
    exact: Optional[bool] = False,
) -> Union[None, Sequence]:
    """
    Retrieves the bounding box for the collection, i.e. the union of all
    rows' geometries.

    Args:
        collection (str): The name of the collection to return the
         bounding box for.
        database (str): The database the collection resides in. Default:
         current database.
        exact (bool): If the exact bbox shall be computed. Warning: This
         may take much longer. Default: False.

    Returns:
        the bounding box given as tuple xmin, ymin, xmax, ymax or None if
        collection is empty

    Examples:
        >>> geodb = GeoDBClient(auth_mode='client-credentials', \
                                client_id='***',
                                client_secret='***')
        >>> geodb.get_collection_bbox('my_collection')
        (-5, 10, 5, 11)

    """
    try:
        from ast import literal_eval

        database = database or self.database
        dn = f"{database}_{collection}"

        if exact:
            r = self._post(
                path="/rpc/geodb_get_collection_bbox", payload={"collection": dn}
            )
        else:
            r = self._post(
                path="/rpc/geodb_estimate_collection_bbox",
                payload={"collection": dn},
            )

        bbox = (
            r.text.replace("BOX", "")
            .replace(" ", ",")
            .replace("(", "")
            .replace(")", "")
            .replace('"', "")
        )
        if bbox == "null":
            return None
        bbox = literal_eval(bbox)
        return bbox[1], bbox[0], bbox[3], bbox[2]
    except GeoDBError as e:
        self._maybe_raise(e)

get_collection_by_bbox(collection, bbox, comparison_mode='contains', bbox_crs=4326, limit=0, offset=0, where='id>-1', op='AND', database=None, wsg84_order='lat_lon', **kwargs)

Query the database by a bounding box. Please be careful with the bbox crs. The easiest is using the same crs as the collection. However, if the bbox crs differs from the collection, the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs. You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into this method.

Parameters:
  • collection (str) –

    The name of the collection to be quried

  • bbox (Tuple[float, float, float, float]) –

    minx, miny, maxx, maxy

  • comparison_mode (str, default: 'contains' ) –

    Filter mode. Can be 'contains' or 'within' ['contains']

  • bbox_crs ((int, str), default: 4326 ) –

    Projection code. [4326]

  • op (str, default: 'AND' ) –

    Operator for where (AND, OR) ['AND']

  • where (str, default: 'id>-1' ) –

    Additional SQL where statement to further filter the collection

  • limit (int, default: 0 ) –

    The maximum number of rows to be returned

  • offset (int, default: 0 ) –

    Offset (start) of rows to return. Used in combination with limit.

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

  • wsg84_order (str, default: 'lat_lon' ) –

    WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if

Returns:
  • Union[GeoDataFrame, DataFrame]

    A GeoPandas Dataframe

Raises:
  • HttpError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> geodb.get_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0,                 102486.299), comparison_mode="contains", bbox_crs=3794, limit=10, offset=10)
Source code in xcube_geodb\core\geodb.py
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@deprecated_kwarg("namespace", "database")
def get_collection_by_bbox(
    self,
    collection: str,
    bbox: Tuple[float, float, float, float],
    comparison_mode: str = "contains",
    bbox_crs: Union[int, str] = 4326,
    limit: int = 0,
    offset: int = 0,
    where: Optional[str] = "id>-1",
    op: str = "AND",
    database: Optional[str] = None,
    wsg84_order="lat_lon",
    **kwargs,
) -> Union[GeoDataFrame, DataFrame]:
    """
    Query the database by a bounding box. Please be careful with the bbox crs. The easiest is
    using the same crs as the collection. However, if the bbox crs differs from the collection,
    the geoDB client will attempt to automatially transform the bbox crs according to the collection's crs.
    You can also directly use the method GeoDBClient.transform_bbox_crs yourself before you pass the bbox into
    this method.

    Args:
        collection (str): The name of the collection to be quried
        bbox (Tuple[float, float, float, float]): minx, miny, maxx, maxy
        comparison_mode (str): Filter mode. Can be 'contains' or 'within' ['contains']
        bbox_crs (int, str): Projection code. [4326]
        op (str): Operator for where (AND, OR) ['AND']
        where (str): Additional SQL where statement to further filter the collection
        limit (int): The maximum number of rows to be returned
        offset (int): Offset (start) of rows to return. Used in combination with limit.
        database (str): The name of the database the collection resides in [current database]
        wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
        Lon Lat is used.

    Returns:
        A GeoPandas Dataframe

    Raises:
        HttpError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.get_collection_by_bbox(table="[MyCollection]", bbox=(452750.0, 88909.549, 464000.0, \
            102486.299), comparison_mode="contains", bbox_crs=3794, limit=10, offset=10)
    """
    bbox_crs = check_crs(bbox_crs)
    database = database or self.database
    dn = database + "_" + collection

    self._raise_for_collection_exists(collection=collection, database=database)
    self._raise_for_stored_procedure_exists("geodb_get_by_bbox")

    coll_crs = self.get_collection_srid(collection=collection, database=database)

    try:
        if coll_crs is not None and coll_crs != bbox_crs:
            bbox = self.transform_bbox_crs(
                bbox, bbox_crs, int(coll_crs), wsg84_order=wsg84_order
            )
            bbox_crs = coll_crs

        headers = {"Accept": "application/vnd.pgrst.object+json"}

        r = self._post(
            "/rpc/geodb_get_by_bbox",
            headers=headers,
            payload={
                "collection": dn,
                "minx": bbox[0],
                "miny": bbox[1],
                "maxx": bbox[2],
                "maxy": bbox[3],
                "comparison_mode": comparison_mode,
                "bbox_crs": bbox_crs,
                "limit": limit,
                "where": where,
                "op": op,
                "offset": offset,
            },
        )

        js = r.json()["src"]
        if js:
            srid = self.get_collection_srid(collection, database)
            return self._df_from_json(js, srid)
        else:
            return GeoDataFrame(columns=["Empty Result"])
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=True)

get_collection_info(collection, database=None)

Parameters:
  • collection (str) –

    The name of the collection to inspect

  • database (str, default: None ) –

    The database the collection resides in [current

Returns:
  • Dict

    A dictionary with collection information

Raises:
  • GeoDBError

    When the collection does not exist

Examples:

>>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
>>> geodb.get_collection_info('my_collection')
{
    'required': ['id', 'geometry'],
    'properties': {
    'id': {
        'format': 'integer', 'type': 'integer',
        'description': 'Note:This is a Primary Key.'
    },
    'created_at': {'format': 'timestamp with time zone', 'type': 'string'},
    'modified_at': {'format': 'timestamp with time zone', 'type': 'string'},
    'geometry': {'format': 'public.geometry(Geometry,3794)', 'type': 'string'},
    'my_property1': {'format': 'double precision', 'type': 'number'},
    'my_property2': {'format': 'double precision', 'type': 'number'},
    'type': 'object'
}
Source code in xcube_geodb\core\geodb.py
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def get_collection_info(
    self, collection: str, database: Optional[str] = None
) -> Dict:
    """

    Args:
        collection (str): The name of the collection to inspect
        database (str): The database the collection resides in [current
        database]

    Returns:
        A dictionary with collection information

    Raises:
        GeoDBError: When the collection does not exist

    Examples:
        >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
        >>> geodb.get_collection_info('my_collection')
        {
            'required': ['id', 'geometry'],
            'properties': {
            'id': {
                'format': 'integer', 'type': 'integer',
                'description': 'Note:This is a Primary Key.'
            },
            'created_at': {'format': 'timestamp with time zone', 'type': 'string'},
            'modified_at': {'format': 'timestamp with time zone', 'type': 'string'},
            'geometry': {'format': 'public.geometry(Geometry,3794)', 'type': 'string'},
            'my_property1': {'format': 'double precision', 'type': 'number'},
            'my_property2': {'format': 'double precision', 'type': 'number'},
            'type': 'object'
        }
    """
    capabilities = self.capabilities
    database = database or self.database

    collection = database + "_" + collection

    if collection in capabilities["definitions"]:
        return capabilities["definitions"][collection]
    else:
        self._maybe_raise(GeoDBError(f"Table {collection} does not exist."))

get_collection_pg(collection, select='*', where=None, group=None, order=None, limit=None, offset=None, database=None)

Parameters:
  • collection (str) –

    The name of the collection to query

  • select (str, default: '*' ) –

    Properties (columns) to return. Can contain aggregation functions

  • where (Optional[str], default: None ) –

    SQL WHERE statement

  • group (Optional[str], default: None ) –

    SQL GROUP statement

  • order (Optional[str], default: None ) –

    SQL ORDER statement

  • limit (Optional[int], default: None ) –

    Limit for paging

  • offset (Optional[int], default: None ) –

    Offset (start) of rows to return. Used in combination with limit.

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

Returns:
  • Union[GeoDataFrame, DataFrame]

    GeoDataFrame or DataFrame: results

Raises:
  • HttpError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> df = geodb.get_collection_pg(collection='[MyCollection]', where='raba_id=1410', group='d_od',                 select='COUNT(d_od) as ct, d_od')
Source code in xcube_geodb\core\geodb.py
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def get_collection_pg(
    self,
    collection: str,
    select: str = "*",
    where: Optional[str] = None,
    group: Optional[str] = None,
    order: Optional[str] = None,
    limit: Optional[int] = None,
    offset: Optional[int] = None,
    database: Optional[str] = None,
) -> Union[GeoDataFrame, DataFrame]:
    """

    Args:
        collection (str): The name of the collection to query
        select (str): Properties (columns) to return. Can contain aggregation functions
        where (Optional[str]): SQL WHERE statement
        group (Optional[str]): SQL GROUP statement
        order (Optional[str]): SQL ORDER statement
        limit (Optional[int]): Limit for paging
        offset (Optional[int]): Offset (start) of rows to return. Used in combination with limit.
        database (str): The name of the database the collection resides in [current database]

    Returns:
        GeoDataFrame or DataFrame: results

    Raises:
        HttpError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> df = geodb.get_collection_pg(collection='[MyCollection]', where='raba_id=1410', group='d_od', \
            select='COUNT(d_od) as ct, d_od')
    """

    tab_prefix = database or self.database
    dn = f"{tab_prefix}_{collection}"

    self._raise_for_collection_exists(collection=collection, database=database)
    self._raise_for_stored_procedure_exists("geodb_get_pg")

    headers = {"Accept": "application/vnd.pgrst.object+json"}

    try:
        r = self._post(
            "/rpc/geodb_get_pg",
            headers=headers,
            payload={
                "select": select,
                "where": where,
                "group": group,
                "limit": limit,
                "order": order,
                "offset": offset,
                "collection": dn,
            },
        )
        r.raise_for_status()

        js = r.json()["src"]

        if js:
            srid = self.get_collection_srid(collection, database)
            return self._df_from_json(js, srid)
        else:
            return DataFrame(columns=["Empty Result"])
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=True)

get_collection_srid(collection, database=None)

Get the SRID of a collection.

Parameters:
  • collection (str) –

    The collection's name

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

Returns:
  • Optional[Union[str, type(None), Message]]

    The name of the SRID

Source code in xcube_geodb\core\geodb.py
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def get_collection_srid(
    self, collection: str, database: Optional[str] = None
) -> Optional[Union[str, type(None), Message]]:
    """
    Get the SRID of a collection.

    Args:
        collection (str): The collection's name
        database (str): The name of the database the collection resides in [current database]

    Returns:
        The name of the SRID
    """
    tab_prefix = database or self.database
    dn = f"{tab_prefix}_{collection}"

    try:
        r = self._post(
            path="/rpc/geodb_get_collection_srid",
            payload={"collection": dn},
            raise_for_status=False,
        )

        if r.status_code == 200:
            js = r.json()[0]["src"][0]

            if js:
                return js["srid"]

        return None
    except GeoDBError as e:
        return self._maybe_raise(e)

get_event_log(collection=None, database=None, event_type=None)

Parameters:
  • collection (str, default: None ) –

    The name of the collection for which to get the event log; if None, all collections are returned

  • database (str, default: None ) –

    The database of the collection

  • event_type (EventType, default: None ) –

    The type of the events for which to get the event log; if None, all events are returned

Returns:
  • DataFrame

    Whether the stored procedure exists

Source code in xcube_geodb\core\geodb.py
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def get_event_log(
    self,
    collection: Optional[str] = None,
    database: Optional[str] = None,
    event_type: Optional[EventType] = None,
) -> DataFrame:
    """
    Args:
        collection (str):       The name of the collection for which to get
                                the event log; if None, all collections are
                                returned
        database (str):         The database of the collection
        event_type (EventType): The type of the events for which to get
                                the event log; if None, all events are
                                returned

    Returns:
        Whether the stored procedure exists

    Raises:
        GeoDBError if the stored procedure does not exist
    """
    path = "/rpc/get_geodb_eventlog"
    if event_type or collection or database:
        path = f"{path}?"
    if event_type:
        path = f"{path}event_type={event_type}"

    if collection or database:
        database = database or self.database
        collection = collection or "%"
        dn = f"{database}_{collection}"
        path = f"{path}&collection={dn}"

    try:
        result = self._get(path=path).json()[0]
        if result["events"]:
            return DataFrame.from_dict(result["events"])
        else:
            return DataFrame(columns=["event_type", "message", "username", "date"])
    except GeoDBError as e:
        return self._maybe_raise(e)

get_geometry_types(collection, aggregate=True, database=None)

Retrieves the geometry types of the given collection, either as an extensive list of the geometry types for each collection entry, or as aggregated list of the types that appear in the collection.

Parameters:
  • collection (str) –

    The collection to list geometry types for

  • aggregate (bool, default: True ) –

    If the result shall be an aggregated list, default is set to "True"

  • database (str, default: None ) –

    The database that contains the collection

Returns: List[str]: A list of the geometry types, either for each collection entry or aggregated. Raises: GeoDBError: If the database raises an error

Source code in xcube_geodb\core\geodb.py
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def get_geometry_types(
    self, collection: str, aggregate: bool = True, database: Optional[str] = None
) -> List[str]:
    """
    Retrieves the geometry types of the given collection, either as an
    extensive list of the geometry types for each collection entry, or
    as aggregated list of the types that appear in the collection.

    Args:
        collection (str):  The collection to list geometry types for
        aggregate (bool):  If the result shall be an aggregated list, default is set to "True"
        database (str):    The database that contains the collection
    Returns:
        List[str]: A list of the geometry types, either for each
                   collection entry or aggregated.
    Raises:
        GeoDBError: If the database raises an error
    """

    try:
        database = database or self._database
        dn = f"{database}_{collection}"

        payload = {"collection": dn, "aggregate": "TRUE" if aggregate else "FALSE"}
        r = self._post(path="/rpc/geodb_geometry_types", payload=payload)
        types = r.json()[0]["types"]
        return [a["geometrytype"] for a in types]
    except GeoDBError as e:
        self._maybe_raise(e)

get_group_users(group)

Returns the users that are member of the given group.

Returns:
  • List

    the users that are member of the given group.

Source code in xcube_geodb\core\geodb.py
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def get_group_users(self, group: str) -> List:
    """
    Returns the users that are member of the given group.

    Returns:
        the users that are member of the given group.
    """
    path = "/rpc/geodb_get_group_users"
    result = self._post(path=path, payload={"group_name": group}).json()
    names = result[0]["res"]
    return sorted([name["rolname"] for name in names])

get_my_collections(database=None)

Parameters:
  • database (str, default: None ) –

    The database to list collections from

Returns:
  • Sequence

    A Dataframe of collection names

Examples:

>>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
>>> geodb.get_my_collections()
    owner                           database                            collection
0   geodb_9bfgsdfg-453f-445b-a459   geodb_9bfgsdfg-453f-445b-a459   land_use
Source code in xcube_geodb\core\geodb.py
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def get_my_collections(self, database: Optional[str] = None) -> Sequence:
    """

    Args:
        database (str): The database to list collections from

    Returns:
        A Dataframe of collection names

    Examples:
        >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
        >>> geodb.get_my_collections()
            owner	                        database	                    collection
        0	geodb_9bfgsdfg-453f-445b-a459	geodb_9bfgsdfg-453f-445b-a459	land_use

    """

    try:
        database = database or self._database
        payload = {"database": database}
        r = self._post(path="/rpc/geodb_get_my_collections", payload=payload)
        js = r.json()[0]["src"]
        if js:
            return self._df_from_json(js)
        else:
            return DataFrame(columns=["collection"])
    except GeoDBError as e:
        self._maybe_raise(e)

get_my_databases()

Get a list of databases the current user owns.

Returns:
  • DataFrame( DataFrame ) –

    A list of databases the user owns

Source code in xcube_geodb\core\geodb.py
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def get_my_databases(self) -> DataFrame:
    """
    Get a list of databases the current user owns.

    Returns:
        DataFrame: A list of databases the user owns

    """

    try:
        return self.get_collection(
            collection="user_databases",
            database="geodb",
            query=f"owner=eq.{self.whoami}",
        )
    except GeoDBError as e:
        return self._maybe_raise(e, return_df=True)

get_my_groups()

Returns the different group memberships of the current user.

Returns:
  • The different group memberships of the current user.

Source code in xcube_geodb\core\geodb.py
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def get_my_groups(self):
    """
    Returns the different group memberships of the current user.

    Returns:
        The different group memberships of the current user.
    """
    path = "/rpc/geodb_get_user_roles"
    names = self._post(path=path, payload={"user_name": self.whoami}).json()[0][
        "src"
    ]
    return sorted(
        [name["rolname"] for name in names if not name["rolname"] == self.whoami]
    )

get_my_usage(pretty=True)

Get my geoDB data usage.

Parameters:
  • pretty (bool, default: True ) –

    Whether to return in human readable form or in bytes

Returns:
  • Union[Dict, Message]

    A dict containing the usage in bytes (int) or as a human readable string

Example

geodb = GeoDBClient() geodb.get_my_usage(True) {'usage': '6432 kB'}

Source code in xcube_geodb\core\geodb.py
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def get_my_usage(self, pretty=True) -> Union[Dict, Message]:
    """
    Get my geoDB data usage.

    Args:
        pretty (bool): Whether to return in human readable form or in bytes

    Returns:
        A dict containing the usage in bytes (int) or as a human readable string

    Example:
        >>> geodb = GeoDBClient()
        >>> geodb.get_my_usage(True)
        {'usage': '6432 kB'}
    """
    payload = {"pretty": pretty} if pretty else {}
    try:
        r = self._post(path="/rpc/geodb_get_my_usage", payload=payload)
        return r.json()[0]["src"][0]
    except GeoDBError as e:
        return self._maybe_raise(e)

get_properties(collection, database=None, **kwargs)

Get a list of properties of a collection.

Parameters:
  • collection (str) –

    The name of the collection to retrieve a list of properties from

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns:
  • DataFrame( DataFrame ) –

    A list of properties

Source code in xcube_geodb\core\geodb.py
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@deprecated_kwarg("namespace", "database")
def get_properties(
    self, collection: str, database: Optional[str] = None, **kwargs
) -> DataFrame:
    """
    Get a list of properties of a collection.

    Args:
        collection (str): The name of the collection to retrieve a list of properties from
        database (str): The database the collection resides in [current database]

    Returns:
        DataFrame: A list of properties

    """
    database = database or self.database
    collection = database + "_" + collection

    try:
        r = self._post(
            path="/rpc/geodb_get_properties", payload={"collection": collection}
        )

        js = r.json()[0]["src"]

        if js:
            return self._df_from_json(js)
        else:
            return DataFrame(columns=["collection", "column_name", "data_type"])
    except GeoDBError as e:
        self._maybe_raise(e, return_df=True)

get_published_gs(database=None)

Parameters:
  • database (str, default: None ) –

    The database to list collections from a database which are published via geoserver

Returns:
  • Union[Sequence, Message]

    A Dataframe of collection names

Examples:

>>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
>>> geodb.get_published_gs()
    owner                           database                            collection
0   geodb_9bfgsdfg-453f-445b-a459   geodb_9bfgsdfg-453f-445b-a459   land_use
Source code in xcube_geodb\core\geodb.py
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def get_published_gs(
    self, database: Optional[str] = None
) -> Union[Sequence, Message]:
    """

    Args:
        database (str): The database to list collections from a database which are published via geoserver

    Returns:
        A Dataframe of collection names

    Examples:
        >>> geodb = GeoDBClient(auth_mode='client-credentials', client_id='***', client_secret='***')
        >>> geodb.get_published_gs()
            owner	                        database	                    collection
        0	geodb_9bfgsdfg-453f-445b-a459	geodb_9bfgsdfg-453f-445b-a459	land_use

    """

    database = database or self._database

    if self._use_winchester_gs:
        path = f"/geodb_geoserver/{database}/collections"
    else:
        path = f"/api/v2/services/xcube_geoserv/databases/{database}/collections"

    try:
        r = self._get(path=path)
        js = r.json()
        if js:
            return DataFrame.from_dict(js)
        else:
            return DataFrame(columns=["collection"])
    except GeoDBError as e:
        return self._maybe_raise(e)

grant_access_to_collection(collection, usr, database=None)

Parameters:
  • collection (str) –

    Collection name to grant access to

  • usr (str) –

    Username to grant access to

  • database (str, default: None ) –

    The database the collection resides in

Returns:
  • bool( Message ) –

    Success

Raises:
  • HttpError

    when http request fails

Examples:

>>> geodb = GeoDBClient()
>>> geodb.grant_access_to_collection('[Collection]', '[User who gets access]')
Access granted on Collection to User who gets access}
Source code in xcube_geodb\core\geodb.py
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def grant_access_to_collection(
    self, collection: str, usr: str, database: Optional[str] = None
) -> Message:
    """

    Args:
        collection (str): Collection name to grant access to
        usr (str): Username to grant access to
        database (str): The database the collection resides in

    Returns:
        bool: Success

    Raises:
        HttpError: when http request fails

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.grant_access_to_collection('[Collection]', '[User who gets access]')
        Access granted on Collection to User who gets access}
    """
    database = database or self.database
    dn = f"{database}_{collection}"

    try:
        self._post(
            path="/rpc/geodb_grant_access_to_collection",
            payload={"collection": dn, "usr": usr},
        )

        return Message(f"Access granted on {collection} to {usr}")
    except GeoDBError as e:
        return self._maybe_raise(e)

head_collection(collection, num_lines=10, database=None)

Get the first num_lines of a collection.

Parameters:
  • collection (str) –

    The collection's name

  • num_lines (int, default: 10 ) –

    The number of line to return

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

Returns:
  • Union[GeoDataFrame, DataFrame]

    GeoDataFrame or DataFrame: results

Raises:
  • HttpError

    When the database raises an error

Examples:

>>> geodb = GeoDBClient()
>>> geodb.head_collection(collection='[MyCollection]', num_lines=10)
Source code in xcube_geodb\core\geodb.py
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def head_collection(
    self, collection: str, num_lines: int = 10, database: Optional[str] = None
) -> Union[GeoDataFrame, DataFrame]:
    """
    Get the first num_lines of a collection.

    Args:
        collection (str): The collection's name
        num_lines (int): The number of line to return
        database (str): The name of the database the collection resides in [current database]

    Returns:
        GeoDataFrame or DataFrame: results

    Raises:
        HttpError: When the database raises an error

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.head_collection(collection='[MyCollection]', num_lines=10)

    """

    return self.get_collection(
        collection=collection, query=f"limit={num_lines}", database=database
    )

insert_into_collection(collection, values, upsert=False, crs=None, database=None, max_transfer_chunk_size=1000)

Insert data into a collection.

Parameters:
  • collection (str) –

    Collection to be inserted to

  • database (str, default: None ) –

    The name of the database the collection resides in [current database]

  • values (GeoDataFrame) –

    Values to be inserted

  • upsert (bool, default: False ) –

    Whether the insert shall replace existing rows (by PK)

  • crs ((int, str), default: None ) –

    crs (in the form of an SRID) of the geometries. If not present, the method will attempt guessing it from the GeoDataFrame input. Must be in sync with the target collection in the GeoDatabase

  • max_transfer_chunk_size (int, default: 1000 ) –

    Maximum number of rows per chunk to be sent to the geodb.

Raises:
  • ValueError

    When crs is not given and cannot be guessed from the GeoDataFrame

  • GeoDBError

    If the values are not in format Dict

Returns:
  • bool( Message ) –

    Success

Example:

Source code in xcube_geodb\core\geodb.py
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def insert_into_collection(
    self,
    collection: str,
    values: GeoDataFrame,
    upsert: bool = False,
    crs: Optional[Union[int, str]] = None,
    database: Optional[str] = None,
    max_transfer_chunk_size: int = 1000,
) -> Message:
    """
    Insert data into a collection.

    Args:
        collection (str): Collection to be inserted to
        database (str): The name of the database the collection resides in
                        [current database]
        values (GeoDataFrame): Values to be inserted
        upsert (bool): Whether the insert shall replace existing rows
                       (by PK)
        crs (int, str): crs (in the form of an SRID) of the geometries. If
                        not present, the method will attempt guessing it
                        from the GeoDataFrame input. Must be in sync with
                        the target collection in the GeoDatabase
        max_transfer_chunk_size (int): Maximum number of rows per chunk to
                                       be sent to the geodb.

    Raises:
        ValueError: When crs is not given and cannot be guessed from the
                    GeoDataFrame
        GeoDBError: If the values are not in format Dict

    Returns:
        bool: Success

    Example:

    """
    srid = self.get_collection_srid(collection, database)
    crs = check_crs(crs)
    if crs and srid and srid != crs:
        raise GeoDBError(
            f"crs {crs} is not compatible with collection's " f"crs {srid}"
        )

    crs = crs or srid
    total_rows = 0

    database = database or self.database
    dn = database + "_" + collection

    if isinstance(values, GeoDataFrame):
        # headers = {'Content-type': 'text/csv'}
        # values = self._gdf_prepare_geom(values, crs)
        ct = 0
        cont = True
        total_rows = values.shape[0]

        while cont:
            frm = ct
            to = ct + max_transfer_chunk_size - 1
            ngdf = values.loc[frm:to]
            ct += max_transfer_chunk_size

            nct = ngdf.shape[0]
            cont = nct > 0
            if not cont:
                break

            if nct < max_transfer_chunk_size:
                to = frm + nct

            print(f"Processing rows from {frm} to {to}")
            if "id" in ngdf.columns and not upsert:
                ngdf.drop(columns=["id"])

            ngdf.columns = map(str.lower, ngdf.columns)
            js = self._gdf_to_json(ngdf, crs)

            if upsert:
                headers = {"Prefer": "resolution=merge-duplicates"}
            else:
                headers = None

            try:
                self._post(f"/{dn}", payload=js, headers=headers)
            except GeoDBError as e:
                return self._maybe_raise(e)
            except requests.exceptions.ConnectionError as e:
                if "Connection aborted" in str(
                    e
                ) and "LineTooLong('got more than 65536 bytes " "when reading header line')" in str(
                    e
                ):
                    # ignore this error - the ingestion has worked.
                    # see https://github.com/dcs4cop/xcube-geodb/issues/60
                    pass
                else:
                    raise e
    else:
        self._maybe_raise(
            GeoDBError(f"Error: Format {type(values)} not " f"supported.")
        )

    msg = f"{total_rows} rows inserted into "
    self._log_event(EventType.ROWS_ADDED, f"{msg}{dn}")
    return Message(f"{msg}{collection}")

list_my_grants()

List the access grants the current user has granted.

Returns:
  • DataFrame( Union[DataFrame, Message] ) –

    A list of the current user's access grants

Raises:
  • GeoDBError

    If access to geoDB fails

Source code in xcube_geodb\core\geodb.py
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def list_my_grants(self) -> Union[DataFrame, Message]:
    """
    List the access grants the current user has granted.

    Returns:
        DataFrame: A list of the current user's access grants

    Raises:
        GeoDBError: If access to geoDB fails
    """
    r = self._post(path="/rpc/geodb_list_grants", payload={})
    try:
        js = r.json()
    except JSONDecodeError as e:
        raise GeoDBError("Body not in valid JSON format: " + str(e))
    try:
        if isinstance(js, list) and len(js) > 0 and "src" in js[0] and js[0]["src"]:
            return self._df_from_json(js[0]["src"])
        else:
            return DataFrame(data={"Grants": ["No Grants"]})
    except Exception as e:
        return self._maybe_raise(GeoDBError(str(e)))

move_collection(collection, new_database, database=None)

Move a collection from one database to another.

Parameters:
  • collection (str) –

    The name of the collection to be moved

  • new_database (str) –

    The database the collection will be moved to

  • database (str, default: None ) –

    The database the collection resides in

Examples:

>>> geodb = GeoDBClient()
>>> geodb.move_collection('collection', 'new_database')
Source code in xcube_geodb\core\geodb.py
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def move_collection(
    self, collection: str, new_database: str, database: Optional[str] = None
):
    """
    Move a collection from one database to another.

    Args:
        collection (str): The name of the collection to be moved
        new_database (str): The database the collection will be moved to
        database (str): The database the collection resides in

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.move_collection('collection', 'new_database')
    """

    database = database or self._database
    old_dn = f"{database}_{collection}"
    new_dn = f"{new_database}_{collection}"

    try:
        self._post(
            path="/rpc/geodb_rename_collection",
            payload={"collection": old_dn, "new_name": new_dn},
        )

        self._log_event(EventType.MOVED, f"collection {old_dn} to {new_dn}")
        return Message(f"Collection moved from {database} to " f"{new_database}")
    except GeoDBError as e:
        return self._maybe_raise(e)

publish_collection(collection, database=None)

Publish a collection. The collection will be accessible by all users in the geoDB.

Parameters:
  • database (str, default: None ) –

    The database the collection resides in [current database]

  • collection (str) –

    The name of the collection that will be made public

Returns:
  • Message( Message ) –

    Message whether operation succeeded

Examples:

>>> geodb = GeoDBClient()
>>> geodb.publish_collection('[Collection]')
Source code in xcube_geodb\core\geodb.py
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def publish_collection(
    self, collection: str, database: Optional[str] = None
) -> Message:
    """
    Publish a collection. The collection will be accessible by all users
    in the geoDB.

    Args:
        database (str): The database the collection resides in
                        [current database]
        collection (str): The name of the collection that will be made
                          public

    Returns:
        Message: Message whether operation succeeded

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.publish_collection('[Collection]')
    """
    try:
        database = database or self.database

        self.grant_access_to_collection(
            collection=collection, usr="public", database=database
        )
        self._log_event(
            EventType.PUBLISHED, f"collection " f"{database}_{collection}"
        )
        return Message(f"Access granted on {database}_{collection} to " f"public.")
    except GeoDBError as e:
        return self._maybe_raise(e)

publish_collection_to_group(collection, group, database=None)

Publishes the collection to the given group. Group members get read and write access to the collection; they cannot publish the collection to other users or groups. This is only allowed if the current user is the owner of the collection.

Parameters:
  • collection (str) –

    The collection's name

  • group (str) –

    Name of the group.

  • database (str, default: None ) –

    The name of the database the collection resides

Returns:
  • Message

    A message if the collection was published to the group.

Source code in xcube_geodb\core\geodb.py
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def publish_collection_to_group(
    self, collection: str, group: str, database: Optional[str] = None
) -> Message:
    """
    Publishes the collection to the given group. Group members get read
    and write access to the collection; they
    cannot publish the collection to other users or groups.
    This is only allowed if the current user is the owner of the
    collection.

    Args:
        collection (str): The collection's name
        group (str): Name of the group.
        database (str): The name of the database the collection resides
        in [current database].

    Returns:
        A message if the collection was published to the group.

    Raises:
        GeoDBError if (1) the collection does not exist, (2) the group
        does not exist,
        (3) the current user is not the owner of the collection.
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    if not self._is_owner_of(dn):
        raise GeoDBError(
            f"User {self.whoami} must be owner of collection " f"{dn} to publish."
        )

    path = "/rpc/geodb_group_publish_collection"
    payload = {
        "collection": dn,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.PUBLISHED_GROUP, f"{collection}, {group}")
    return Message(
        f"Published collection {collection} in database "
        f"{database} to group {group}."
    )

publish_database_to_group(group, database=None)

Publishes the database to the given group and enables group users to write into the same database. For example, if some user A creates the database someproject, users that share a group G with A are allowed to create new collections in that database (like someproject_insitudata) if A publishes the database to the group G. Group users shall not, however, be allowed to read or write any existing collection in the database; this needs extra permission by the group admin, using the already existing function publish_collection_to_group.

Parameters:
  • database (str, default: None ) –

    The name of the database to publish. Default: the username.

  • group (str) –

    Name of the group.

Source code in xcube_geodb\core\geodb.py
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def publish_database_to_group(
    self, group: str, database: Optional[str] = None
) -> Message:
    """
    Publishes the database to the given group and enables group users to write into the same database.
    For example, if some user A creates the database `someproject`, users that share a group G with A are
    allowed to create new collections in that database (like `someproject_insitudata`) if A publishes the database
    to the group G. Group users shall not, however, be allowed to read or write any existing collection in the
    database; this needs extra permission by the group admin, using the already existing function
    `publish_collection_to_group`.

    Args:
        database (str): The name of the database to publish. Default: the username.
        group (str): Name of the group.
    """
    database = database or self.database
    dn = f"{database}_dummy"
    if not self._is_owner_of(dn):
        raise GeoDBError(
            f"User {self.whoami} must be owner of database "
            f"{database} to publish."
        )

    path = "/rpc/geodb_group_publish_database"
    payload = {
        "database": database,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.PUBLISHED_DATABASE, f"{database}, {group}")
    return Message(f"Published database {database} to group {group}.")

publish_gs(collection, database=None)

Publishes collection to a BC geoservice (geoserver instance). Requires access registration.

Parameters:
  • collection (str) –

    Name of the collection

  • database (Optional[str], default: None ) –

    Name of the database. Defaults to user database

Returns:
  • Dict

Source code in xcube_geodb\core\geodb.py
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def publish_gs(self, collection: str, database: Optional[str] = None):
    """
    Publishes collection to a BC geoservice (geoserver instance). Requires
    access registration.

    Args:
        collection (str): Name of the collection
        database (Optional[str]): Name of the database. Defaults to user
                                database

    Returns:
        Dict

    """
    database = database or self.database

    try:
        if self._use_winchester_gs:
            r = self._put(
                path=f"/geodb_geoserver/{database}/collections/",
                payload={"collection_id": collection},
            )
        else:
            r = self._put(
                path=f"/api/v2/services/xcube_geoserv/databases/"
                f"{database}/collections",
                payload={"collection_id": collection},
            )
        self._log_event(
            EventType.PUBLISHED_GS, f"collection {database}_{collection}"
        )
        return r.json()
    except GeoDBError as e:
        return self._maybe_raise(e)

refresh_auth_access_token()

Refresh the authentication token.

Source code in xcube_geodb\core\geodb.py
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def refresh_auth_access_token(self):
    """
    Refresh the authentication token.

    """
    self._auth_access_token = None

refresh_config_from_env(dotenv_file='.env', use_dotenv=False)

Refresh the configuration from environment variables. The variables can be preset by a dotenv file. Args: dotenv_file (str): A dotenv config file use_dotenv (bool): Whether to use GEODB_AUTH_CLIENT_ID a dotenv file.

Source code in xcube_geodb\core\geodb.py
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def refresh_config_from_env(
    self, dotenv_file: str = ".env", use_dotenv: bool = False
):
    """
    Refresh the configuration from environment variables. The variables can be preset by a dotenv file.
    Args:
        dotenv_file (str): A dotenv config file
        use_dotenv (bool): Whether to use GEODB_AUTH_CLIENT_ID a dotenv file.

    """
    if use_dotenv:
        self._dotenv_file = find_dotenv(filename=dotenv_file)
        if self._dotenv_file:
            load_dotenv(self._dotenv_file)
    self._set_from_env()

remove_index(collection, prop, database=None)

Removes the index on the given collection and the given property.

Parameters:
  • collection (str) –

    The collection's name

  • prop (str) –

    The name of the property to add an index to.

  • database (str, default: None ) –

    The name of the database the collection resides in [current database].

Returns: A message if the index was successfully removed.

Source code in xcube_geodb\core\geodb.py
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def remove_index(self, collection: str, prop: str, database: str = None) -> Message:
    """
    Removes the index on the given collection and the given property.

    Args:
        collection (str): The collection's name
        prop (str): The name of the property to add an index to.
        database (str): The name of the database the collection resides
                        in [current database].
    Returns:
        A message if the index was successfully removed.
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    path = "/rpc/geodb_drop_index"
    payload = {
        "collection": dn,
        "property": prop,
    }

    self._log_event(EventType.INDEX_DROPPED, "table {dn} and property {prop}")

    self._post(path=path, payload=payload)
    return Message(f"Removed index from table {dn} and property {prop}.")

remove_user_from_group(user, group)

Removes the user from the given group.

Parameters:
  • user (str) –

    Name of the user.

  • group (str) –

    Name of the group.

Returns:
  • Message

    A message if the user was removed from the group.

Source code in xcube_geodb\core\geodb.py
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def remove_user_from_group(self, user: str, group: str) -> Message:
    """
    Removes the user from the given group.

    Args:
        user (str): Name of the user.
        group (str): Name of the group.

    Returns:
        A message if the user was removed from the group.

    Raises:
        GeoDBError if (1) the user does not exist, (2) the group does not
        exist, (3) the current user does not have
        sufficient rights to remove the user from the group.
    """

    path = "/rpc/geodb_group_revoke"
    payload = {
        "user_name": user,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.GROUP_REMOVED, f"{user}, {group}")
    return Message(f"Removed user {user} from {group}")

rename_collection(collection, new_name, database=None)

Parameters:
  • collection (str) –

    The name of the collection to be renamed

  • new_name (str) –

    The new name of the collection

  • database (str, default: None ) –

    The database the collection resides in

Raises:
  • HttpError

    When request fails

Source code in xcube_geodb\core\geodb.py
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def rename_collection(
    self, collection: str, new_name: str, database: Optional[str] = None
):
    """

    Args:
        collection (str): The name of the collection to be renamed
        new_name (str):The new name of the collection
        database (str): The database the collection resides in

    Raises:
        HttpError: When request fails
    """

    database = database or self._database

    old_dn = f"{database}_{collection}"
    new_dn = f"{database}_{new_name}"

    try:
        self._post(
            path="/rpc/geodb_rename_collection",
            payload={"collection": old_dn, "new_name": new_dn},
        )
        self._log_event(EventType.RENAMED, f"collection {old_dn} to {new_dn}")
        return Message(f"Collection renamed from {collection} to {new_name}")
    except GeoDBError as e:
        return self._maybe_raise(e)

revoke_access_from_collection(collection, usr, database=None)

Revoke access from a collection.

Parameters:
  • collection (str) –

    Name of the collection

  • usr (str) –

    User to revoke access from

  • database (str, default: None ) –

    The database the collection resides in [current database]

Returns:
  • Message( Message ) –

    Whether operation has succeeded

Source code in xcube_geodb\core\geodb.py
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def revoke_access_from_collection(
    self, collection: str, usr: str, database: Optional[str] = None
) -> Message:
    """
    Revoke access from a collection.

    Args:
        collection (str): Name of the collection
        usr (str): User to revoke access from
        database (str): The database the collection resides in
                        [current database]

    Returns:
        Message: Whether operation has succeeded
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    try:
        self._post(
            path="/rpc/geodb_revoke_access_from_collection",
            payload={"collection": dn, "usr": usr},
        )
        self._log_event(EventType.UNPUBLISHED, f"collection {dn}")
        return Message(f"Access revoked from public on {dn}")
    except GeoDBError as e:
        return self._maybe_raise(e)

setup(host=None, port=None, user=None, passwd=None, dbname=None, conn=None) staticmethod

Sets up the database. Needs DB credentials and the database user requires CREATE TABLE/FUNCTION grants.

Source code in xcube_geodb\core\geodb.py
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@staticmethod
def setup(
    host: Optional[str] = None,
    port: Optional[str] = None,
    user: Optional[str] = None,
    passwd: Optional[str] = None,
    dbname: Optional[str] = None,
    conn: Optional[any] = None,
):
    """
    Sets up  the database. Needs DB credentials and the database user requires CREATE TABLE/FUNCTION grants.
    """
    host = host or os.getenv("GEODB_DB_HOST")
    port = port or os.getenv("GEODB_DB_PORT")
    user = user or os.getenv("GEODB_DB_USER")
    passwd = passwd or os.getenv("GEODB_DB_PASSWD")
    dbname = dbname or os.getenv("GEODB_DB_DBNAME")

    try:
        import psycopg2
    except ImportError:
        raise GeoDBError("You need to install psycopg2 first to run this module.")

    conn = conn or psycopg2.connect(
        host=host, port=port, user=user, password=passwd, dbname=dbname
    )
    cursor = conn.cursor()

    with open(f"xcube_geodb/sql/geodb.sql") as sql_file:
        sql_create = sql_file.read()
        cursor.execute(sql_create)

    conn.commit()

show_indexes(collection, database=None)

Shows the indexes on the given collection.

Parameters:
  • collection (str) –

    The collection's name

  • database (str, default: None ) –

    The name of the database the collection resides in [current database].

Returns: A dataframe containing the list of indexes for the given collection.

Source code in xcube_geodb\core\geodb.py
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def show_indexes(self, collection: str, database: str = None) -> DataFrame:
    """
    Shows the indexes on the given collection.

    Args:
        collection (str): The collection's name
        database (str): The name of the database the collection resides
                        in [current database].
    Returns:
        A dataframe containing the list of indexes for the given
        collection.
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    path = "/rpc/geodb_show_indexes"
    payload = {
        "collection": dn,
    }

    r = self._post(path=path, payload=payload)
    return DataFrame(r.json())

transform_bbox_crs(bbox, from_crs, to_crs, wsg84_order='lat_lon') staticmethod

This function can be used to reproject bboxes particularly with the use of GeoDBClient.get_collection_by_bbox.

Parameters:
  • bbox (Tuple[float, float, float, float]) –

    Tuple[float, float, float, float]: bbox to be reprojected, given as MINX, MINY, MAXX, MAXY

  • from_crs (Union[int, str]) –

    Source crs e.g. 3974

  • to_crs (Union[int, str]) –

    Target crs e.g. 4326

  • wsg84_order (str, default: 'lat_lon' ) –

    WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if Lon Lat is used.

Returns: Tuple[float, float, float, float]: The reprojected bounding box

Examples:

>>> bbox = GeoDBClient.transform_bbox_crs(bbox=(450000, 100000, 470000, 110000), from_crs=3794, to_crs=4326)
>>> bbox
(49.36588643725233, 46.012889756941775, 14.311548793848758, 9.834303086688251)
Source code in xcube_geodb\core\geodb.py
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@staticmethod
def transform_bbox_crs(
    bbox: Tuple[float, float, float, float],
    from_crs: Union[int, str],
    to_crs: Union[int, str],
    wsg84_order: str = "lat_lon",
):
    """
    This function can be used to reproject bboxes particularly with the use of GeoDBClient.get_collection_by_bbox.

    Args:
        bbox: Tuple[float, float, float, float]: bbox to be reprojected, given as MINX, MINY, MAXX, MAXY
        from_crs: Source crs e.g. 3974
        to_crs: Target crs e.g. 4326
        wsg84_order (str): WSG84 (EPSG:4326) is expected to be in Lat Lon format ("lat_lon"). Use "lon_lat" if
                           Lon Lat is used.
    Returns:
        Tuple[float, float, float, float]: The reprojected bounding box

    Examples:
         >>> bbox = GeoDBClient.transform_bbox_crs(bbox=(450000, 100000, 470000, 110000), from_crs=3794, to_crs=4326)
         >>> bbox
         (49.36588643725233, 46.012889756941775, 14.311548793848758, 9.834303086688251)

    """
    from pyproj import Transformer

    from_crs = check_crs(from_crs)
    to_crs = check_crs(to_crs)

    if wsg84_order == "lat_lon" and from_crs == 4326:
        bbox = (bbox[1], bbox[0], bbox[3], bbox[2])

    transformer = Transformer.from_crs(f"EPSG:{from_crs}", f"EPSG:{to_crs}")
    p1 = transformer.transform(bbox[MINX], bbox[MINY])
    p2 = transformer.transform(bbox[MAXX], bbox[MAXY])

    if wsg84_order == "lat_lon" and to_crs == 4326:
        return p1[1], p1[0], p2[1], p2[0]

    return p1[0], p1[1], p2[0], p2[1]

truncate_database(database)

Delete all tables in the given database.

Parameters:
  • database (str) –

    The name of the database to be created

Returns:
  • Message( Message ) –

    A message about the success or failure of the operation

Source code in xcube_geodb\core\geodb.py
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def truncate_database(self, database: str) -> Message:
    """
    Delete all tables in the given database.

    Args:
        database (str): The name of the database to be created

    Returns:
        Message: A message about the success or failure of the operation

    """

    try:
        self._post(
            path="/rpc/geodb_truncate_database", payload={"database": database}
        )
        return Message(f"Database {database} truncated")
    except GeoDBError as e:
        return self._maybe_raise(e)

unpublish_collection(collection, database=None)

Revoke public access to a collection. The collection will not be accessible by all users in the geoDB.

Parameters:
  • database (str, default: None ) –

    The database the collection resides in

  • collection (str) –

    The name of the collection that will be removed

Returns:
  • Message( Message ) –

    Message whether operation succeeded

Examples:

>>> geodb = GeoDBClient()
>>> geodb.unpublish_collection('[Collection]')
Source code in xcube_geodb\core\geodb.py
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def unpublish_collection(
    self, collection: str, database: Optional[str] = None
) -> Message:
    """
    Revoke public access to a collection. The collection will not be
    accessible by all users in the geoDB.

    Args:
        database (str): The database the collection resides in
        [current database]
        collection (str): The name of the collection that will be removed
        from public access

    Returns:
        Message: Message whether operation succeeded

    Examples:
        >>> geodb = GeoDBClient()
        >>> geodb.unpublish_collection('[Collection]')
    """
    database = database or self.database

    try:
        return self.revoke_access_from_collection(
            collection=collection, usr="public", database=database
        )
    except GeoDBError as e:
        return self._maybe_raise(e)

unpublish_collection_from_group(collection, group, database=None)

Unpublishes the collection from the given group.

Parameters:
  • collection (str) –

    The collection's name

  • database (str, default: None ) –

    The name of the database the collection resides

  • group (str) –

    Name of the group.

Returns:
  • Message

    A message if the collection was unpublished from the group.

Source code in xcube_geodb\core\geodb.py
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def unpublish_collection_from_group(
    self, collection: str, group: str, database: Optional[str] = None
) -> Message:
    """
    Unpublishes the collection from the given group.

    Args:
        collection (str): The collection's name
        database (str): The name of the database the collection resides
        in [current database].
        group (str): Name of the group.

    Returns:
        A message if the collection was unpublished from the group.

    Raises:
        GeoDBError if (1) the collection does not exist, (2) the group
        does not exist,
        (3) the current user is not the owner of the collection.
    """

    database = database or self.database
    dn = f"{database}_{collection}"

    if not self._is_owner_of(dn):
        raise GeoDBError(
            f"User {self.whoami} must be owner of " f"collection {dn} to unpublish."
        )

    path = "/rpc/geodb_group_unpublish_collection"
    payload = {
        "collection": dn,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.UNPUBLISHED_GROUP, f"{collection}, {group}")
    return Message(
        f"Unpublished collection {collection} in database "
        f"{database} from group {group}."
    )

unpublish_database_from_group(group, database=None)

Unpublishes the database from the given group.

Parameters:
  • database (str, default: None ) –

    The name of the database to unpublish. Default: the username.

  • group (str) –

    Name of the group.

Source code in xcube_geodb\core\geodb.py
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def unpublish_database_from_group(
    self, group: str, database: Optional[str] = None
) -> Message:
    """
    Unpublishes the database from the given group.

    Args:
        database (str): The name of the database to unpublish. Default: the username.
        group (str): Name of the group.
    """
    database = database or self.database
    dn = f"{database}_dummy"
    if not self._is_owner_of(dn):
        raise GeoDBError(
            f"User {self.whoami} must be owner of database "
            f"{database} to unpublish."
        )

    path = "/rpc/geodb_group_unpublish_database"
    payload = {
        "database": database,
        "user_group": group,
    }

    self._post(path=path, payload=payload)
    self._log_event(EventType.UNPUBLISHED_DATABASE, f"{database}, {group}")
    return Message(f"Unpublished database {database} from group {group}.")

unpublish_gs(collection, database)

'Unpublishes' collection from a BC geoservice (geoserver instance). Requires access registration.

Parameters:
  • collection (str) –

    Name of the collection

  • database (Optional[str]) –

    Name of the database. Defaults to user database

Returns:
  • Dict

Source code in xcube_geodb\core\geodb.py
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def unpublish_gs(self, collection: str, database: str):
    """
    'Unpublishes' collection from a BC geoservice (geoserver instance).
    Requires access registration.

    Args:
        collection (str): Name of the collection
        database (Optional[str]): Name of the database. Defaults to user
                                  database

    Returns:
        Dict

    """

    database = database or self._database

    try:
        if self._use_winchester_gs:
            self._delete(
                path=f"/geodb_geoserver/" f"{database}/collections/{collection}"
            )
        else:
            self._delete(
                path=f"/api/v2/services/xcube_geoserv/databases/"
                f"{database}/collections/{collection}"
            )
        self._log_event(
            EventType.UNPUBLISHED_GS, f"collection {database}_{collection}"
        )
        return Message(
            f"Collection {collection} in database {database} "
            f"deleted from Geoservice"
        )
    except GeoDBError as e:
        return self._maybe_raise(e)

update_collection(collection, values, query, database=None, **kwargs)

Update data in a collection by a query.

Parameters:
  • collection (str) –

    The name of the collection to be updated

  • database (str, default: None ) –

    The name of the database to be checked

  • values (Dict) –

    Values to update

  • query (str) –

    Filter which values to be updated. Follow the http://postgrest.org/en/v6.0/api.html query

Returns: Message: Success

Raises:
  • GeoDBError

    if the values is not a Dict or request fails

Example:

Source code in xcube_geodb\core\geodb.py
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@deprecated_kwarg("namespace", "database")
def update_collection(
    self,
    collection: str,
    values: Dict,
    query: str,
    database: Optional[str] = None,
    **kwargs,
) -> Message:
    """
    Update data in a collection by a query.

    Args:
        collection (str): The name of the collection to be updated
        database (str): The name of the database to be checked
        values (Dict): Values to update
        query (str): Filter which values to be updated. Follow the http://postgrest.org/en/v6.0/api.html query
        convention.
    Returns:
        Message: Success

    Raises:
        GeoDBError: if the values is not a Dict or request fails
    Example:

    """

    database = database or self.database
    dn = database + "_" + collection

    self._raise_for_collection_exists(collection=collection, database=database)

    if isinstance(values, Dict):
        if "id" in values.keys():
            del values["id"]
    else:
        raise GeoDBError(f"Format {type(values)} not supported.")

    try:
        self._patch(f"/{dn}?{query}", payload=values)
        return Message(f"{collection} updated")
    except GeoDBError as e:
        return self._maybe_raise(e)